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Missing output files #44

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Oksanak22 opened this issue Oct 20, 2022 · 0 comments
Open

Missing output files #44

Oksanak22 opened this issue Oct 20, 2022 · 0 comments

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@Oksanak22
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Hello!

Could you please help me with the following issue:
When I run the Snakemake pipeline it give me an error:
"rule bwa_index_refgenome:
input: results/refgenome/Tb.rg.fa
output: results/refgenome/Tb.rg.fa.bwt
log: results/logs/results/refgenome/Tb.rg.fa.bwt.log
jobid: 2
benchmark: results/benchmarks/results/refgenome/Tb.rg.fa.bwt.bench.txt
reason: Missing output files: results/refgenome/Tb.rg.fa.bwt
wildcards: refgenome_id=Tb
resources: tmpdir=/tmp
"
I don't understand why I don't have Tb.rg.fa.bwt file. What did I do wrong?

Thank you.

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