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-watchdog = ["watchdog"] +watchdog = ["watchdog (>=2.3)"] [[package]] name = "xmltodict" @@ -1803,4 +2001,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "9f0bf77068281fab1e62c77c9964fefee974649ed52e0cb2a62eef08b08195e5" +content-hash = "0a2c95b5364072d008c2569b748eb2232eca24a06ec0e3dc34610a1190f86ad6" diff --git a/app/pyproject.toml b/app/pyproject.toml index 4697e871..90048208 100644 --- a/app/pyproject.toml +++ b/app/pyproject.toml @@ -7,37 +7,38 @@ authors = ["Nava Engineering "] [tool.poetry.dependencies] python = "^3.10" -SQLAlchemy = {extras = ["mypy"], version = "2.0"} -alembic = "^1.8.1" +SQLAlchemy = {version = "^2.0.21", extras = ["mypy"]} +alembic = "^1.12.0" python-dotenv = "^0.20.0" pydantic = "^1.10.0" -botocore = "^1.27.67" -boto3 = "~1.24.67" +botocore = "^1.31.62" +boto3 = "^1.28.62" smart-open = "^6.1.0" -pytz = "^2022.2.1" -APIFlask = "^1.1.3" +pytz = "^2023.3.post1" +APIFlask = "^2.0.2" marshmallow-dataclass = {extras = ["enum", "union"], version = "^8.5.8"} -marshmallow = "^3.18.0" +marshmallow = "^3.20.1" gunicorn = "^21.2.0" psycopg = {extras = ["binary"], version = "^3.1.10"} [tool.poetry.group.dev.dependencies] -black = "^22.6.0" -flake8 = "^5.0.4" -flake8-bugbear = "^22.8.23" +black = "^23.9.1" +flake8 = "^6.1.0" +flake8-bugbear = "^23.9.16" flake8-alfred = "^1.1.1" -isort = "^5.10.1" -mypy = "^0.971" +isort = "^5.12.0" +mypy = "^1.5.1" moto = {extras = ["s3"], version = "^4.0.2"} -types-pytz = "^2022.2.1" -coverage = "^6.4.4" -Faker = "^14.2.0" -factory-boy = "^3.2.1" -bandit = "^1.7.4" -pytest = "^6.0.0" +types-pytz = "^2023.3.1.1" +coverage = "^7.3.2" +Faker = "^19.8.0" +factory-boy = "^3.3.0" +bandit = "^1.7.5" +pytest = "^7.4.2" pytest-watch = "^4.2.0" pytest-lazy-fixture = "^0.6.3" types-pyyaml = "^6.0.12.11" +setuptools = "^68.2.2" [build-system] requires = ["poetry-core>=1.0.0"] @@ -81,6 +82,8 @@ warn_redundant_casts = true warn_unreachable = true warn_unused_ignores = true +plugins = ["pydantic.mypy"] + [tool.bandit] # Ignore audit logging test file since test audit logging requires a lot of operations that trigger bandit warnings exclude_dirs = ["./tests/src/logging/test_audit.py"] @@ -98,9 +101,7 @@ disallow_untyped_defs = false # When a library has addressed its deprecation issues and we've updated the # library, we can remove the ignore filter for that library. filterwarnings = [ - "ignore::DeprecationWarning:botocore.*", - "ignore::DeprecationWarning:apispec.*", - "ignore::DeprecationWarning:certifi.*"] # pytest-watch errors if the closing bracket is on it's own line + "ignore::DeprecationWarning:botocore.*"] # pytest-watch errors if the closing bracket is on it's own line markers = [ "audit: mark a test as a security audit log test, to be run isolated from other tests"] diff --git a/app/src/adapters/db/flask_db.py b/app/src/adapters/db/flask_db.py index 779e5ad4..2ee7a6e1 100644 --- a/app/src/adapters/db/flask_db.py +++ b/app/src/adapters/db/flask_db.py @@ -39,7 +39,7 @@ def health(): # db_client.get_connection() or db_client.get_session() """ from functools import wraps -from typing import Any, Callable, Concatenate, ParamSpec, TypeVar +from typing import Callable, Concatenate, ParamSpec, TypeVar from flask import Flask, current_app @@ -115,10 +115,13 @@ def fiz(db_session: db.Session, x, y, z): def decorator(f: Callable[Concatenate[db.Session, P], T]) -> Callable[P, T]: @wraps(f) - def wrapper(*args: Any, **kwargs: Any) -> T: + def wrapper(*args: P.args, **kwargs: P.kwargs) -> T: with get_db(current_app, client_name=client_name).get_session() as session: return f(session, *args, **kwargs) return wrapper - return decorator + # mypy says the type should be something slightly different + # Callable[[Arg(Callable[[Session, **P], T], 'f')], Callable[P, T]] + # but also mentions that "Arg" is deprecated, so not sure how to make it happy + return decorator # type: ignore diff --git a/app/src/api/users/user_routes.py b/app/src/api/users/user_routes.py index 338ae313..1e43d169 100644 --- a/app/src/api/users/user_routes.py +++ b/app/src/api/users/user_routes.py @@ -15,7 +15,7 @@ @user_blueprint.post("/v1/users") -@user_blueprint.input(user_schemas.UserSchema) +@user_blueprint.input(user_schemas.UserSchema, arg_name="user_params") @user_blueprint.output(user_schemas.UserSchema, status_code=201) @user_blueprint.auth_required(api_key_auth) @flask_db.with_db_session() @@ -32,7 +32,7 @@ def user_post(db_session: db.Session, user_params: users.CreateUserParams) -> di # Allow partial updates. partial=true means requests that are missing # required fields will not be rejected. # https://marshmallow.readthedocs.io/en/stable/quickstart.html#partial-loading -@user_blueprint.input(user_schemas.UserSchema(partial=True)) +@user_blueprint.input(user_schemas.UserSchema(partial=True), arg_name="patch_user_params") @user_blueprint.output(user_schemas.UserSchema) @user_blueprint.auth_required(api_key_auth) @flask_db.with_db_session() diff --git a/app/src/db/migrations/env.py b/app/src/db/migrations/env.py index 54158dfe..11278bde 100644 --- a/app/src/db/migrations/env.py +++ b/app/src/db/migrations/env.py @@ -16,7 +16,6 @@ # Initialize logging with src.logging.init("migrations"): - # add your model's MetaData object here # for 'autogenerate' support # from myapp import mymodel diff --git a/app/src/db/models/base.py b/app/src/db/models/base.py index a7abddf0..8ba276c8 100644 --- a/app/src/db/models/base.py +++ b/app/src/db/models/base.py @@ -51,7 +51,7 @@ class Base(DeclarativeBase): } def _dict(self) -> dict: - return {c.key: getattr(self, c.key) for c in inspect(self).mapper.column_attrs} # type: ignore + return {c.key: getattr(self, c.key) for c in inspect(self).mapper.column_attrs} def for_json(self) -> dict: json_valid_dict = {} diff --git a/app/src/logging/audit.py b/app/src/logging/audit.py index 49b29a21..0ae27728 100644 --- a/app/src/logging/audit.py +++ b/app/src/logging/audit.py @@ -72,7 +72,9 @@ def handle_audit_event(event_name: str, args: tuple[Any, ...]) -> None: def log_audit_event(event_name: str, args: Sequence[Any], arg_names: Sequence[str]) -> None: """Log a message but only log recently repeated messages at intervals.""" extra = { - f"audit.args.{arg_name}": arg for arg_name, arg in zip(arg_names, args) if arg_name != "_" + f"audit.args.{arg_name}": arg + for arg_name, arg in zip(arg_names, args, strict=True) + if arg_name != "_" } key = (event_name, repr(args)) diff --git a/app/src/logging/formatters.py b/app/src/logging/formatters.py index 277d4974..ab810de9 100644 --- a/app/src/logging/formatters.py +++ b/app/src/logging/formatters.py @@ -101,7 +101,7 @@ def __init__(self, message_width: int = HUMAN_READABLE_FORMATTER_DEFAULT_MESSAGE def format(self, record: logging.LogRecord) -> str: message = super().format(record) return decodelog.format_line( - datetime.utcfromtimestamp(record.created), + datetime.fromtimestamp(record.created), record.name, record.funcName, record.levelname, diff --git a/app/src/services/users/patch_user.py b/app/src/services/users/patch_user.py index 3a21c039..afcbf35f 100644 --- a/app/src/services/users/patch_user.py +++ b/app/src/services/users/patch_user.py @@ -30,7 +30,6 @@ def patch_user( user_id: str, patch_user_params: PatchUserParams, ) -> User: - with db_session.begin(): # TODO: move this to service and/or persistence layer user = db_session.get(User, user_id, options=[orm.selectinload(User.roles)]) @@ -50,7 +49,6 @@ def patch_user( def _handle_role_patch(db_session: Session, user: User, request_roles: list[RoleParams]) -> None: - current_role_types = set([role.type for role in user.roles]) request_role_types = set([role["type"] for role in request_roles]) diff --git a/app/tests/src/logging/test_audit.py b/app/tests/src/logging/test_audit.py index 4282f7f9..d7788c66 100644 --- a/app/tests/src/logging/test_audit.py +++ b/app/tests/src/logging/test_audit.py @@ -141,7 +141,7 @@ def test_audit_hook( pass assert len(caplog.records) == len(expected_records) - for record, expected_record in zip(caplog.records, expected_records): + for record, expected_record in zip(caplog.records, expected_records, strict=True): assert record.levelname == "AUDIT" assert_record_match(record, expected_record) @@ -161,7 +161,7 @@ def test_os_kill(init_audit_hook, caplog: pytest.LogCaptureFixture): ] assert len(caplog.records) == len(expected_records) - for record, expected_record in zip(caplog.records, expected_records): + for record, expected_record in zip(caplog.records, expected_records, strict=True): assert record.levelname == "AUDIT" assert_record_match(record, expected_record) @@ -232,7 +232,7 @@ def test_repeated_audit_logs( ] assert len(caplog.records) == len(expected_records) - for record, expected_record in zip(caplog.records, expected_records): + for record, expected_record in zip(caplog.records, expected_records, strict=True): assert record.levelname == "AUDIT" assert_record_match(record, expected_record) diff --git a/app/tests/src/logging/test_flask_logger.py b/app/tests/src/logging/test_flask_logger.py index a3aa8507..82fd0c8d 100644 --- a/app/tests/src/logging/test_flask_logger.py +++ b/app/tests/src/logging/test_flask_logger.py @@ -83,7 +83,7 @@ def test_request_lifecycle_logs( # then the log message in the after_request handler. assert len(caplog.records) == len(expected_extras) - for record, expected_extra in zip(caplog.records, expected_extras): + for record, expected_extra in zip(caplog.records, expected_extras, strict=True): assert_dict_contains(record.__dict__, expected_extra) diff --git a/app/tests/src/logging/test_logging.py b/app/tests/src/logging/test_logging.py index 6991ce37..f3bbc4dc 100644 --- a/app/tests/src/logging/test_logging.py +++ b/app/tests/src/logging/test_logging.py @@ -28,7 +28,6 @@ def test_init(caplog: pytest.LogCaptureFixture, monkeypatch, log_format, expecte monkeypatch.setenv("LOG_FORMAT", log_format) with src.logging.init("test_logging"): - records = caplog.records assert len(records) == 2 assert re.match(