diff --git a/config/dataset/nih_multihop.yaml b/config/dataset/nih_multihop.yaml new file mode 100644 index 0000000..b4ec96f --- /dev/null +++ b/config/dataset/nih_multihop.yaml @@ -0,0 +1,19 @@ +train: + doc: null + query: null +dev: + doc: + init_args: + _target_: modules.processors.nih_dataset_processor.NIHDatasetMultiHop + is_query: false + split: "train" + + query: + init_args: + _target_: modules.processors.nih_dataset_processor.NIHDatasetMultiHop + is_query: true + split: "train" + +test: + doc: null + query: null \ No newline at end of file diff --git a/config/dataset/nih_number.yaml b/config/dataset/nih_number.yaml new file mode 100644 index 0000000..f3c630e --- /dev/null +++ b/config/dataset/nih_number.yaml @@ -0,0 +1,19 @@ +train: + doc: null + query: null +dev: + doc: + init_args: + _target_: modules.processors.nih_dataset_processor.NIHDatasetNumber + is_query: false + split: "train" + + query: + init_args: + _target_: modules.processors.nih_dataset_processor.NIHDatasetNumber + is_query: true + split: "train" + +test: + doc: null + query: null \ No newline at end of file diff --git a/config/dataset/nih_simple.yaml b/config/dataset/nih_simple.yaml new file mode 100644 index 0000000..dedc120 --- /dev/null +++ b/config/dataset/nih_simple.yaml @@ -0,0 +1,19 @@ +train: + doc: null + query: null +dev: + doc: + init_args: + _target_: modules.processors.nih_dataset_processor.NIHDatasetSimple + is_query: false + split: "train" + + query: + init_args: + _target_: modules.processors.nih_dataset_processor.NIHDatasetSimple + is_query: true + split: "train" + +test: + doc: null + query: null \ No newline at end of file diff --git a/modules/processors/nih_dataset_processor.py b/modules/processors/nih_dataset_processor.py new file mode 100644 index 0000000..59a2bbb --- /dev/null +++ b/modules/processors/nih_dataset_processor.py @@ -0,0 +1,47 @@ +import datasets +import os +from ..dataset_processor import * + +class NIHDataset(Processor): + + def __init__(self, config_name='number',is_query=True,*args, **kwargs): + self.dataset_name='nih_v1_'+config_name + if is_query: + self.dataset_name+='_query' + else: + self.dataset_name+='_doc' + self.conf_name= config_name + self.is_query=is_query + super().__init__(dataset_name=self.dataset_name,*args, **kwargs) + + def process(self): + print(self.conf_name) + d = datasets.load_dataset('naver/bergen_nih_v1',self.conf_name)[self.split] + if self.is_query: + #reprocess single str label into a list of str + dataset = d.rename_column("qid", "id") + dataset = dataset.rename_column("query", "content") + dataset = dataset.remove_columns(['did', 'doc']) + dataset = dataset.map(lambda x: {"label": [str(x["label"])]}) + return dataset + else: + #document dataset + dataset = d.rename_column("did", "id") + dataset = dataset.rename_column("doc", "content") + dataset = dataset.remove_columns(['qid', 'query','label']) + print(dataset[:10]) + return dataset + +class NIHDatasetNumber(NIHDataset): + def __init__(self, *args, **kwargs): + super().__init__(*args, **kwargs,config_name='number') + +class NIHDatasetSimple(NIHDataset): + def __init__(self, *args, **kwargs): + super().__init__(*args, **kwargs,config_name='simple') + +class NIHDatasetMultiHop(NIHDataset): + def __init__(self, *args, **kwargs): + super().__init__(*args, **kwargs,config_name='multihop') + + diff --git a/runs/run.oracle.nih_v1_multihop_query.dev.trec b/runs/run.oracle.nih_v1_multihop_query.dev.trec new file mode 100644 index 0000000..318bef0 --- /dev/null +++ b/runs/run.oracle.nih_v1_multihop_query.dev.trec @@ -0,0 +1,512 @@ +nih_dataset_v1_nih_multihop_q_0 q0 nih_dataset_v1_nih_multihop_d_0 0 100 run +nih_dataset_v1_nih_multihop_q_1 q0 nih_dataset_v1_nih_multihop_d_1 0 100 run +nih_dataset_v1_nih_multihop_q_2 q0 nih_dataset_v1_nih_multihop_d_2 0 100 run +nih_dataset_v1_nih_multihop_q_3 q0 nih_dataset_v1_nih_multihop_d_3 0 100 run +nih_dataset_v1_nih_multihop_q_4 q0 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