From 48434e0a70c9cdaf23e4363914e6eac5316b7893 Mon Sep 17 00:00:00 2001
From: KeithKelleher <keith.kelleher@ncats.nih.gov>
Date: Wed, 22 May 2024 22:56:23 -0400
Subject: [PATCH] pre-fetch the sqlite database for the Docker container

---
 apps/ramp-server/install.R | 1 +
 apps/ramp-server/plumber.R | 4 +++-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/apps/ramp-server/install.R b/apps/ramp-server/install.R
index e23b04b..71efbeb 100644
--- a/apps/ramp-server/install.R
+++ b/apps/ramp-server/install.R
@@ -10,3 +10,4 @@ install_github("ncats/RaMP-DB", force = TRUE, dependencies=TRUE)
 
 library(RaMP)
 
+rampDB <<- RaMP:::RaMP() # pre-load sqlite database to the container
diff --git a/apps/ramp-server/plumber.R b/apps/ramp-server/plumber.R
index 334aa22..80fb61f 100644
--- a/apps/ramp-server/plumber.R
+++ b/apps/ramp-server/plumber.R
@@ -5,6 +5,8 @@ library(R.cache)
 library(readr)
 library(ggplot2)
 
+rampDB <<- RaMP:::RaMP()
+
 #* @apiTitle RaMP_API
 #* @apiDescription REST API for the Relational Database of Metabolomics Pathways (RaMP) Application
 #* @apiVersion 1.0.1
@@ -520,7 +522,7 @@ function(
 #' @param biospecimen Restrict background to particular biospecimen
 #' @param file: File
 #' @parser multi
-#' @parser text                                                               
+#' @parser text
 #' @parser json
 #' @post /api/chemical-enrichment
 function(metabolites = '', file = '', biospecimen = '', background = "database") {