From 0598b9f6e8a37a42938f1db8648ff1b3355be519 Mon Sep 17 00:00:00 2001
From: mdorf <mdorf@stanford.edu>
Date: Thu, 21 Nov 2024 14:45:53 -0800
Subject: [PATCH] fixed failing unit tests as a result of modifying the test
 ontologies

---
 test/models/test_ontology.rb            | 6 +++---
 test/models/test_ontology_submission.rb | 6 +++---
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/test/models/test_ontology.rb b/test/models/test_ontology.rb
index 438f34d1..f0b4f3c6 100644
--- a/test/models/test_ontology.rb
+++ b/test/models/test_ontology.rb
@@ -153,7 +153,7 @@ def test_ontology_properties
     ont.bring(:submissions)
     sub = ont.submissions[0]
     props = ont.properties()
-    assert_equal 82, props.length
+    assert_equal 85, props.length
 
     # verify sorting
     assert_equal "http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#AlgorithmPurpose", props[0].id.to_s
@@ -192,7 +192,7 @@ def test_ontology_properties
 
     # test property roots
     pr = ont.property_roots(sub, extra_include=[:hasChildren, :children])
-    assert_equal 61, pr.length
+    assert_equal 64, pr.length
 
     # verify sorting
     assert_equal "http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#AlgorithmPurpose", pr[0].id.to_s
@@ -206,7 +206,7 @@ def test_ontology_properties
     assert_equal 33, dpr.length
     # count annotation properties
     apr = pr.select { |p| p.class == LinkedData::Models::AnnotationProperty }
-    assert_equal 10, apr.length
+    assert_equal 13, apr.length
     # check for non-root properties
     assert_empty pr.select { |p| ["http://www.w3.org/2004/02/skos/core#broaderTransitive",
                                   "http://www.w3.org/2004/02/skos/core#topConceptOf",
diff --git a/test/models/test_ontology_submission.rb b/test/models/test_ontology_submission.rb
index ccf33359..a233c74e 100644
--- a/test/models/test_ontology_submission.rb
+++ b/test/models/test_ontology_submission.rb
@@ -448,7 +448,7 @@ def test_index_properties
                      "./test/data/ontology_files/BRO_v3.5.owl", 1,
                      process_rdf: true, extract_metadata: false, index_properties: true)
     res = LinkedData::Models::Class.search("*:*", {:fq => "submissionAcronym:\"BRO\"", :start => 0, :rows => 80}, :property)
-    assert_equal 80 , res["response"]["numFound"]
+    assert_equal 83 , res["response"]["numFound"]
     found = 0
 
     res["response"]["docs"].each do |doc|
@@ -1139,7 +1139,7 @@ def test_submission_metrics
     metrics.bring_remaining
     assert_instance_of LinkedData::Models::Metric, metrics
 
-    assert_includes [481, 486], metrics.classes # 486 if owlapi imports skos classes
+    assert_includes [481, 487], metrics.classes # 486 if owlapi imports skos classes
     assert_includes [63, 45], metrics.properties # 63 if owlapi imports skos properties
     assert_equal 124, metrics.individuals
     assert_includes [13, 14], metrics.classesWithOneChild # 14 if owlapi imports skos properties
@@ -1161,7 +1161,7 @@ def test_submission_metrics
     metrics.bring_remaining
 
     #all the child metrics should be 0 since we declare it as flat
-    assert_equal 486, metrics.classes
+    assert_equal 487, metrics.classes
     assert_equal 63, metrics.properties
     assert_equal 124, metrics.individuals
     assert_equal 0, metrics.classesWithOneChild