Not all ontologies in the specified input folder are parsed

[jvendetti]

End users of BioPortal are supposed to be able to create a new ontology submission where the file upload portion is a ZIP file that contains multiple ontology source files.

The findLocalOntologies method correctly identifies all ontology source files in a specified input folder, and stores them in an array. However, subsequent code that handles ontology content only loads/parses the file designated as the "master" file (the -m option).