Source code for MSI Detection in tumor samples.
pip install clin-msiconda install -c bioconda clin-msiclin-msi <command> [options]
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train
Train your model by supplying BAM files with their associated MSI status
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predict
Predict the MSI status of a BAM by comparing it to your trained model
The package is managed using
curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python -
source $HOME/.poetry/envpoetry install -v