From 5e52cf6458deb316c8dfd8cb19c3c2c6e86f193d Mon Sep 17 00:00:00 2001 From: Retype GitHub Action Date: Thu, 19 Oct 2023 15:20:24 +0000 Subject: [PATCH] Refreshes Retype-generated documentation. Process triggered by alexeliotlash. --- 404.html | 8 +++--- access_controlled/cds_access/index.html | 8 +++--- access_controlled/db_gap/index.html | 8 +++--- access_controlled/introduction/index.html | 8 +++--- access_controlled/sb-cgc_access/index.html | 24 +++++++++++++++--- data_model/biospecimens/index.html | 8 +++--- data_model/clinical/index.html | 8 +++--- data_model/identifiers/index.html | 8 +++--- data_model/imaging/index.html | 8 +++--- data_model/overview/index.html | 8 +++--- data_model/relationships/index.html | 8 +++--- data_model/sequencing/index.html | 8 +++--- data_model/spatial_transcriptomics/index.html | 8 +++--- index.html | 8 +++--- open_access/biq_query/index.html | 8 +++--- open_access/cds_imaging/index.html | 8 +++--- open_access/cell_by_gene/index.html | 8 +++--- open_access/image_data_commons/index.html | 8 +++--- open_access/introduction/index.html | 8 +++--- open_access/minerva/index.html | 8 +++--- open_access/portal/index.html | 8 +++--- overview/centers/index.html | 8 +++--- overview/data_levels/index.html | 8 +++--- overview/introduction/index.html | 8 +++--- overview/tool_catalog/index.html | 8 +++--- resources/js/config.js | 2 +- sitemap.xml.gz | Bin 508 -> 508 bytes 27 files changed, 117 insertions(+), 101 deletions(-) diff --git a/404.html b/404.html index 505a3438..4e991063 100644 --- a/404.html +++ b/404.html @@ -3,7 +3,7 @@ - + @@ -27,11 +27,11 @@ - + - + - +
diff --git a/access_controlled/cds_access/index.html b/access_controlled/cds_access/index.html index 3344976a..3bc3a6a6 100644 --- a/access_controlled/cds_access/index.html +++ b/access_controlled/cds_access/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/access_controlled/db_gap/index.html b/access_controlled/db_gap/index.html index 45c2f98f..c7d3df85 100644 --- a/access_controlled/db_gap/index.html +++ b/access_controlled/db_gap/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/access_controlled/introduction/index.html b/access_controlled/introduction/index.html index 21efc7d6..87b3f8c1 100644 --- a/access_controlled/introduction/index.html +++ b/access_controlled/introduction/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/access_controlled/sb-cgc_access/index.html b/access_controlled/sb-cgc_access/index.html index f86b42fd..f162ca85 100644 --- a/access_controlled/sb-cgc_access/index.html +++ b/access_controlled/sb-cgc_access/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
@@ -171,7 +171,23 @@

SB-CGC Cancer Data Service (CDS) Explorer

+
+
+ +

Once your dbGaP application has been approved, you can access HTAN data via the Cancer Data Service browser within the Seven Bridges Cancer Genomics Cloud. To do so, head to Seven Bridges Cancer Genomics Cloud, and log in with your ERA Commons credentials.

Once logged in, navigate to the top navigation bar, and select Data > Cancer Data Service Explorer.

diff --git a/data_model/biospecimens/index.html b/data_model/biospecimens/index.html index 5e8e1e40..26d84a4a 100644 --- a/data_model/biospecimens/index.html +++ b/data_model/biospecimens/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/data_model/clinical/index.html b/data_model/clinical/index.html index 69831950..c907e1a6 100644 --- a/data_model/clinical/index.html +++ b/data_model/clinical/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/data_model/identifiers/index.html b/data_model/identifiers/index.html index b35ea865..4c0e0ce3 100644 --- a/data_model/identifiers/index.html +++ b/data_model/identifiers/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/data_model/imaging/index.html b/data_model/imaging/index.html index d6016c75..e81e7f19 100644 --- a/data_model/imaging/index.html +++ b/data_model/imaging/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/data_model/overview/index.html b/data_model/overview/index.html index ec442124..6560bdf9 100644 --- a/data_model/overview/index.html +++ b/data_model/overview/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/data_model/relationships/index.html b/data_model/relationships/index.html index ade8fbae..b54e99db 100644 --- a/data_model/relationships/index.html +++ b/data_model/relationships/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/data_model/sequencing/index.html b/data_model/sequencing/index.html index 114d768b..dfc4ae20 100644 --- a/data_model/sequencing/index.html +++ b/data_model/sequencing/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/data_model/spatial_transcriptomics/index.html b/data_model/spatial_transcriptomics/index.html index 73a9b9c3..4bf6efc0 100644 --- a/data_model/spatial_transcriptomics/index.html +++ b/data_model/spatial_transcriptomics/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/index.html b/index.html index 6913baca..585ad154 100644 --- a/index.html +++ b/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/open_access/biq_query/index.html b/open_access/biq_query/index.html index 473c1cce..9d4f742c 100644 --- a/open_access/biq_query/index.html +++ b/open_access/biq_query/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/open_access/cds_imaging/index.html b/open_access/cds_imaging/index.html index e66c0151..4ae8c718 100644 --- a/open_access/cds_imaging/index.html +++ b/open_access/cds_imaging/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/open_access/cell_by_gene/index.html b/open_access/cell_by_gene/index.html index 133987f9..96749ee1 100644 --- a/open_access/cell_by_gene/index.html +++ b/open_access/cell_by_gene/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/open_access/image_data_commons/index.html b/open_access/image_data_commons/index.html index 767583c0..41c9e99a 100644 --- a/open_access/image_data_commons/index.html +++ b/open_access/image_data_commons/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/open_access/introduction/index.html b/open_access/introduction/index.html index 339bebcc..1c4310b8 100644 --- a/open_access/introduction/index.html +++ b/open_access/introduction/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/open_access/minerva/index.html b/open_access/minerva/index.html index 6f5c910d..78b40e11 100644 --- a/open_access/minerva/index.html +++ b/open_access/minerva/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/open_access/portal/index.html b/open_access/portal/index.html index 49b6fc8e..0d447b6a 100644 --- a/open_access/portal/index.html +++ b/open_access/portal/index.html @@ -3,7 +3,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/overview/centers/index.html b/overview/centers/index.html index 65dc35ae..243803e4 100644 --- a/overview/centers/index.html +++ b/overview/centers/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/overview/data_levels/index.html b/overview/data_levels/index.html index 016a74b5..15e6a6c8 100644 --- a/overview/data_levels/index.html +++ b/overview/data_levels/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/overview/introduction/index.html b/overview/introduction/index.html index fa971409..231f34a9 100644 --- a/overview/introduction/index.html +++ b/overview/introduction/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/overview/tool_catalog/index.html b/overview/tool_catalog/index.html index 3b09d2b1..fc3ab626 100644 --- a/overview/tool_catalog/index.html +++ b/overview/tool_catalog/index.html @@ -3,7 +3,7 @@ - + @@ -30,11 +30,11 @@ - + - + - +
diff --git a/resources/js/config.js b/resources/js/config.js index a332a599..e0c4a160 100644 --- a/resources/js/config.js +++ b/resources/js/config.js @@ -1 +1 @@ -var __DOCS_CONFIG__ = {"id":"4QtIAhdZWlkVXaFK8Dh250WNx/CNPOqBW/Z","key":"xGflEwkJEvqgZAQF+of7m2fi0/gPRQlrDeHAPz8HuDY.bbrj1X6ZbJo5kqMEUmNMI4AeayuzBPfojlepWkO+hXyXd9uE0nVLNoLZHcvRu1LrPpol+Qx6+asC9MJHClUfuA.26","base":"/","host":"","version":"1.0.0","useRelativePaths":true,"documentName":"index.html","appendDocumentName":false,"trailingSlash":true,"preloadSearch":false,"cacheBustingToken":"3.5.0.751043911676","cacheBustingStrategy":"query","sidebarFilterPlaceholder":"Filter","toolbarFilterPlaceholder":"Filter","showSidebarFilter":true,"filterNotFoundMsg":"No member names found containing the query \"{query}\"","maxHistoryItems":15,"homeIcon":"","access":[{"value":"public","label":"Public"},{"value":"protected","label":"Protected"}],"toolbarLinks":[{"id":"fields","label":"Fields"},{"id":"properties","label":"Properties"},{"id":"methods","label":"Methods"},{"id":"events","label":"Events"}],"sidebar":[{"n":"/","l":"HTAN: The Missing Manual"},{"n":"overview","l":"Overview","c":false,"i":[{"n":"introduction","l":"Introduction to HTAN"},{"n":"centers","l":"HTAN Centers"},{"n":"data_levels","l":"HTAN Data Levels"},{"n":"tool_catalog","l":"HTAN Tool Catalog"}]},{"n":"data_model","l":"Data Model","c":false,"i":[{"n":"overview","l":"Data Model"},{"n":"identifiers","l":"Identifiers"},{"n":"clinical","l":"Clinical Metadata"},{"n":"biospecimens","l":"Biospecimen Metadata"},{"n":"sequencing","l":"Sequencing Data"},{"n":"imaging","l":"Imaging Data"},{"n":"spatial_transcriptomics","l":"Spatial Transcriptomics"},{"n":"relationships","l":"Relationship Model"}]},{"n":"open_access","l":"Open Access Data","c":false,"i":[{"n":"introduction","l":"Open Access Data"},{"n":"portal","l":"Using the HTAN Data Portal"},{"n":"cell_by_gene","l":"Visualizing Single Cell Data via Cellx​Gene"},{"n":"minerva","l":"Visualizing Multiplex Imaging Data via Minerva"},{"n":"image_data_commons","l":"Accessing Images via Image Data Commons (IDC)"},{"n":"cds_imaging","l":"Accessing Images via SB-​CGC Cancer Data Service (CDS)"},{"n":"biq_query","l":"Google Big​Query"}]},{"n":"access_controlled","l":"Access Controlled Data","c":false,"i":[{"n":"introduction","l":"Access-​Controlled Data"},{"n":"db_gap","l":"Requesting db​Ga​P Access"},{"n":"cds_access","l":"NCI's Cancer Data Service"},{"n":"sb-cgc_access","l":"SB-​CGC Cancer Data Service (CDS) Explorer"}]}],"search":{"mode":0,"minChars":2,"maxResults":20,"placeholder":"Search","hotkeys":["k"],"noResultsFoundMsg":"Sorry, no results found.","recognizeLanguages":true,"languages":[0],"preload":false},"resources":{"History_Title_Label":"History","History_ClearLink_Label":"Clear","History_NoHistory_Label":"No history items","API_AccessFilter_Label":"Access","API_ParameterSection_Label":"PARAMETERS","API_SignatureSection_Label":"SIGNATURE","API_CopyHint_Label":"Copy","API_CopyNameHint_Label":"Copy name","API_CopyLinkHint_Label":"Copy link","API_CopiedAckHint_Label":"Copied!","API_MoreOverloads_Label":"more","API_MoreDropdownItems_Label":"More","API_OptionalParameter_Label":"optional","API_DefaultParameterValue_Label":"Default value","API_InheritedFilter_Label":"Inherited","Search_Input_Placeholder":"Search","Toc_Contents_Label":"Contents","Toc_RelatedClasses_Label":"Related Classes","History_JustNowTime_Label":"just now","History_AgoTime_Label":"ago","History_YearTime_Label":"y","History_MonthTime_Label":"mo","History_DayTime_Label":"d","History_HourTime_Label":"h","History_MinuteTime_Label":"m","History_SecondTime_Label":"s"}}; +var __DOCS_CONFIG__ = {"id":"nDlbk3h3250R78VK/vbEflgIiwXA+y4LpRF","key":"5EmnJJ9/mtMIRq4+SoBcGe6kxoMCI7TNJE8lwOawEWE.AfNSkWEaqMMEu7pjBUTjiorIxDoIMEUgQA2creVBQanNrQqaYh9hX9+l7WMoIiKl1OW3Fy6k4UOqUAiDTA6enw.30","base":"/","host":"","version":"1.0.0","useRelativePaths":true,"documentName":"index.html","appendDocumentName":false,"trailingSlash":true,"preloadSearch":false,"cacheBustingToken":"3.5.0.751044021183","cacheBustingStrategy":"query","sidebarFilterPlaceholder":"Filter","toolbarFilterPlaceholder":"Filter","showSidebarFilter":true,"filterNotFoundMsg":"No member names found containing the query \"{query}\"","maxHistoryItems":15,"homeIcon":"","access":[{"value":"public","label":"Public"},{"value":"protected","label":"Protected"}],"toolbarLinks":[{"id":"fields","label":"Fields"},{"id":"properties","label":"Properties"},{"id":"methods","label":"Methods"},{"id":"events","label":"Events"}],"sidebar":[{"n":"/","l":"HTAN: The Missing Manual"},{"n":"overview","l":"Overview","c":false,"i":[{"n":"introduction","l":"Introduction to HTAN"},{"n":"centers","l":"HTAN Centers"},{"n":"data_levels","l":"HTAN Data Levels"},{"n":"tool_catalog","l":"HTAN Tool Catalog"}]},{"n":"data_model","l":"Data Model","c":false,"i":[{"n":"overview","l":"Data Model"},{"n":"identifiers","l":"Identifiers"},{"n":"clinical","l":"Clinical Metadata"},{"n":"biospecimens","l":"Biospecimen Metadata"},{"n":"sequencing","l":"Sequencing Data"},{"n":"imaging","l":"Imaging Data"},{"n":"spatial_transcriptomics","l":"Spatial Transcriptomics"},{"n":"relationships","l":"Relationship Model"}]},{"n":"open_access","l":"Open Access Data","c":false,"i":[{"n":"introduction","l":"Open Access Data"},{"n":"portal","l":"Using the HTAN Data Portal"},{"n":"cell_by_gene","l":"Visualizing Single Cell Data via Cellx​Gene"},{"n":"minerva","l":"Visualizing Multiplex Imaging Data via Minerva"},{"n":"image_data_commons","l":"Accessing Images via Image Data Commons (IDC)"},{"n":"cds_imaging","l":"Accessing Images via SB-​CGC Cancer Data Service (CDS)"},{"n":"biq_query","l":"Google Big​Query"}]},{"n":"access_controlled","l":"Access Controlled Data","c":false,"i":[{"n":"introduction","l":"Access-​Controlled Data"},{"n":"db_gap","l":"Requesting db​Ga​P Access"},{"n":"cds_access","l":"NCI's Cancer Data Service"},{"n":"sb-cgc_access","l":"SB-​CGC Cancer Data Service (CDS) Explorer"}]}],"search":{"mode":0,"minChars":2,"maxResults":20,"placeholder":"Search","hotkeys":["k"],"noResultsFoundMsg":"Sorry, no results found.","recognizeLanguages":true,"languages":[0],"preload":false},"resources":{"History_Title_Label":"History","History_ClearLink_Label":"Clear","History_NoHistory_Label":"No history items","API_AccessFilter_Label":"Access","API_ParameterSection_Label":"PARAMETERS","API_SignatureSection_Label":"SIGNATURE","API_CopyHint_Label":"Copy","API_CopyNameHint_Label":"Copy name","API_CopyLinkHint_Label":"Copy link","API_CopiedAckHint_Label":"Copied!","API_MoreOverloads_Label":"more","API_MoreDropdownItems_Label":"More","API_OptionalParameter_Label":"optional","API_DefaultParameterValue_Label":"Default value","API_InheritedFilter_Label":"Inherited","Search_Input_Placeholder":"Search","Toc_Contents_Label":"Contents","Toc_RelatedClasses_Label":"Related Classes","History_JustNowTime_Label":"just now","History_AgoTime_Label":"ago","History_YearTime_Label":"y","History_MonthTime_Label":"mo","History_DayTime_Label":"d","History_HourTime_Label":"h","History_MinuteTime_Label":"m","History_SecondTime_Label":"s"}}; diff --git a/sitemap.xml.gz b/sitemap.xml.gz index 87a7295a7a2ef9e9539bb0818c5ef892bc41b152..e88824180a1275c312ee607f767de3b31a347238 100644 GIT binary patch literal 508 zcmV&cYT6(GaJj8GsKcF)OJGi z_G1W&dYJ_k=nCDAu~f*oHWM3^$I94@sI7@%7B^?dX;KaI)JBXR@Lw$nZ8U zS5ed}^=r72hL>bd`el5;oL8nU^EBVAvvi#m&)MBBPj^}VJM0_ZUiY?E7%Tjx44|;Glh|iJuW4 z@*v?15(glgpMMLI_0e}n(S9$)EehTkNqIn$ra>W?3ebY4jB{`fzYynVLe!xY#UFuG zjoXL$2wVy+IFl&)zvk;#!nhW=P@r*QuznZp`a0L{C`vrxdSc4_MpblLd1_G1R zTc#biqV+}zj+2k6IM=SE-1KcJCDiB*x}EA(Us39cHo@{SAT|p|RcowAYSGDt^-i9H zl(f3g1~i~RO!kX+5K8D^9t=f)iCcsY1v>N$H%b|#X|*I9wWEmhVpA+&sKhG`Gt*vB y2&UTB*S_pyF(P4rET2`bTJwe@vgH5vv0({+R?5|100030{{sMZSM8(S3;+O~?Dn|; literal 508 zcmVrxJ!)6xV(0%jw_iEFyepYp!FgfyDJ`-*O+a(g2;H92Z?9k1`}Cz+9WPFL z2ua+m{V6?%U=M_JU6*+gKr!nx<67eRIo^0OJ|uZoruQ?4_j6G4my_LgI8&5mNrty+ zwMvp+sbAxjG`u25(l6r!=7Ta#waGWzb&;=&^0jz66#GL_evkXcxA(o)3FAb#Rq>OK z5^&HV*2Mo2 zAMzmK3K9pPn4f#3Ks97)g0VlBPu=ma=ZJ_46Q3(h2p{+IdswJ_cS7YZ~^3>GkWc)LVjh^~M_@VuZ96l<~M7u2D*aUd{B zgJarrCu}fEaGZQh#kqGS<)&{-DWO4c(A`w8`i#=lw2hXJ0kK^$s;qGVsYNFn)(3eG zQquZHThM?4G1)IZKq#T3c`y|HC2kQr6zI@1+$d#`rqz;cG@c^Pi*31pp%!m6&P;bh yA((1gpZl_p#fXFfvV2zgdd*vo$g=sfj}1%wvr?^o0ssL2{{sN&B4rQV3;+OV!|&Yy