From b1779d1cdbab9611dbe9ecfedb4630a99d5953e7 Mon Sep 17 00:00:00 2001 From: David de Boer Date: Wed, 3 Jul 2024 19:14:09 +0200 Subject: [PATCH] feat: Import dumps to SPARQL endpoint --- README.md | 22 +- jest.config.js | 4 +- package-lock.json | 27277 +++++++++++++++++++++++------------------- package.json | 5 +- src/pipeline.ts | 1 + src/stage.ts | 1 + test/import.test.ts | 2 +- 7 files changed, 14822 insertions(+), 12490 deletions(-) diff --git a/README.md b/README.md index 31073ce..3eb0852 100644 --- a/README.md +++ b/README.md @@ -20,6 +20,7 @@ A pipeline consists of one or more **stages**. Each stage has: - one or more **generators**, which generate triples about each URI using SPARQL CONSTRUCT queries. Stages can be chained together, with the output of one stage becoming the input of the next. +The output of each stage combined becomes the final output of the pipeline. ### Design principles @@ -133,18 +134,31 @@ To query large local files, you may need to load them into a SPARQL store first. for example Oxigraph: ```shell -docker run --rm -v $PWD/data:/data -p 7878:7878 oxigraph/oxigraph --location /data serve +docker run --rm -v $PWD/data:/data -p 7878:7878 oxigraph/oxigraph --location /data serve --bind 0.0.0.0:7878 ``` -Then configure the store in your pipeline: +Then configure the store in your pipeline, configuring at least one store under `stores` +and using the `importTo` parameter to import the `endpoint`’s data to the store, +referencing the store’s `queryUrl`: ```yaml # config.yml stores: - - queryUrl: "http://localhost:7878/query" - storeUrl: "http://localhost:7878/store" + - queryUrl: "http://localhost:7878/query" # SPARQL endpoint for read queries. + storeUrl: "http://localhost:7878/store" # SPARQL Graph Store HTTP Protocol endpoint. + +stages: + - name: ... + iterator: + query: ... + endpoint: file://../../../static/tests/iris.nt + importTo: http://localhost:7878/query + generator: + - query: ... ``` +The data is loaded into a named graph ``, so in this case ``. + #### Example configuration ```yaml diff --git a/jest.config.js b/jest.config.js index 6095f78..5896089 100644 --- a/jest.config.js +++ b/jest.config.js @@ -11,8 +11,8 @@ export default { coverageReporters: ['json-summary', 'text'], coverageThreshold: { global: { - lines: 71.15, - statements: 71.25, + lines: 70.9, + statements: 71.01, branches: 66.66, functions: 76.59, }, diff --git a/package-lock.json b/package-lock.json index dca2d5e..83a395a 100644 --- a/package-lock.json +++ b/package-lock.json @@ -9,8 +9,8 @@ "version": "0.0.0-development", "license": "EUPL-1.2", "dependencies": { - "@comunica/query-sparql": "^3.1.2", - "@comunica/query-sparql-file": "^3.1.2", + 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e99110b..4e6088e 100644 --- a/src/pipeline.ts +++ b/src/pipeline.ts @@ -207,6 +207,7 @@ class Pipeline { this.increaseProgress(progress, stage, iterationsProcessed, count); }); stage.on('error', e => { + progress.fail('Error: ' + (e as Error).message); reject(e); }); stage.on('end', (iris, statements) => { diff --git a/src/stage.ts b/src/stage.ts index 60f347f..84ae9c9 100644 --- a/src/stage.ts +++ b/src/stage.ts @@ -106,6 +106,7 @@ export default class Stage extends EventEmitter { await this.importer.run(); } catch (e) { this.emit('error', e as Error); + return; } } diff --git a/test/import.test.ts b/test/import.test.ts index 7b083c5..9c26a2a 100644 --- a/test/import.test.ts +++ b/test/import.test.ts @@ -39,6 +39,6 @@ describe('Import', () => { }, 15_000); afterAll(async () => { - // await sparqlStore.stop(); + await sparqlStore.stop(); }); });