From 2b175f93193b309a750c1a3a12541a17a3f21462 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Thu, 29 Aug 2024 14:55:08 -0400
Subject: [PATCH 1/3] Add github action to codespell main on push and PRs

---
 .github/workflows/codespell.yml | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 .github/workflows/codespell.yml

diff --git a/.github/workflows/codespell.yml b/.github/workflows/codespell.yml
new file mode 100644
index 0000000..c59e047
--- /dev/null
+++ b/.github/workflows/codespell.yml
@@ -0,0 +1,25 @@
+# Codespell configuration is within .codespellrc
+---
+name: Codespell
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+permissions:
+  contents: read
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Annotate locations with typos
+        uses: codespell-project/codespell-problem-matcher@v1
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v2

From d04f72967751ea396ca21ee59afe825afda0ed2e Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Thu, 29 Aug 2024 14:55:08 -0400
Subject: [PATCH 2/3] Add rudimentary codespell config

---
 .codespellrc | 6 ++++++
 1 file changed, 6 insertions(+)
 create mode 100644 .codespellrc

diff --git a/.codespellrc b/.codespellrc
new file mode 100644
index 0000000..4389e72
--- /dev/null
+++ b/.codespellrc
@@ -0,0 +1,6 @@
+[codespell]
+# Ref: https://github.com/codespell-project/codespell#using-a-config-file
+skip = .git*,*.pdf,.codespellrc
+check-hidden = true
+# ignore-regex = 
+# ignore-words-list =

From 1c8d4ede581bc2dfb9f64d14bfee125cfcdd5f1e Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Thu, 29 Aug 2024 14:55:23 -0400
Subject: [PATCH 3/3] [DATALAD RUNCMD] run codespell throughout fixing typos
 automagically

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
---
 docs/projects/qa.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/projects/qa.md b/docs/projects/qa.md
index d17d57c..88943a3 100644
--- a/docs/projects/qa.md
+++ b/docs/projects/qa.md
@@ -1,4 +1,4 @@
-# Quality Assesment (QA)
+# Quality Assessment (QA)
 
 While traditionally regarded as noise, systemic physiological processes are frequently shown to be linked with cognitive processes and may contribute valuable information to fMRI studies. Recognizing this, neuroimaging research increasingly draws upon concurrent recordings of peripheral physiology to enhance fMRI analysis. However, the usefulness of physiological data is contingent upon the quality of the recordings as well as expertise in data handling. Not only is quality assessment a tedious process, but the assessments can also vary significantly between raters. While there are manual and template-based tools for assessing peak detection quality (physiopy’s peakdet, PhysIO, etc.), and automated exclusion criteria based on statistical summary metrics, we are not aware of automated approaches that can provide a rapid, effective determination of quality on the whole-scan or windowed level.