Add color by mutation (versus color by Nextclade)

[j23414]

Context

SW3
Characteristic mutations NS4A-A85T and NS5-K314R. Grubaugh Lab recommends using NS5 K314R to designate SW03 as they have found that this mutation has better resolution, as in “the topology from that point forward changes less when the maximum likelihood tree is rebuilt”. This will solve the issue of the 4 sequences misclassified, but we wonder if it might result in the misclassification of others.

WN02
Characteristic mutation E-V159A
First detected in 2001/2002 in Texas
The mutation E-V159A has been present in every isolate sequenced since 2004

NY99
Original viral genotype that lacks the two mutations

Description

Examples

Possible solution