From caca3626420f0e6ad3492b377b2df302d5c66617 Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Mon, 22 Nov 2021 19:49:19 +0100
Subject: [PATCH] [ci skip] Merge PR 31612

Merge PR #31612, commits were:
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * See if ete3 is the issue
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * debug
 * Update meta.yaml
 * Update meta.yaml
 * Update recipes/deeparg/meta.yaml
 * Add deepARG recipe
 * Merge branch 'master' of github.com:jfy133/bioconda-recipes into master
 * Merge branch 'bioconda:master' into master
 * Add deepARG recipe
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge pull request #2 from bioconda/master

Get latest versions
 * Merge pull request #1 from bioconda/master

Get latest GATK recipe
---
 recipes/deeparg/LICENSE.txt | 21 +++++++++++++++++
 recipes/deeparg/meta.yaml   | 46 +++++++++++++++++++++++++++++++++++++
 2 files changed, 67 insertions(+)
 create mode 100644 recipes/deeparg/LICENSE.txt
 create mode 100644 recipes/deeparg/meta.yaml

diff --git a/recipes/deeparg/LICENSE.txt b/recipes/deeparg/LICENSE.txt
new file mode 100644
index 0000000000000..6f3880f4c290b
--- /dev/null
+++ b/recipes/deeparg/LICENSE.txt
@@ -0,0 +1,21 @@
+The MIT License
+
+Copyright (c) 2010-2017 Google, Inc. http://angularjs.org
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/recipes/deeparg/meta.yaml b/recipes/deeparg/meta.yaml
new file mode 100644
index 0000000000000..409b041d970eb
--- /dev/null
+++ b/recipes/deeparg/meta.yaml
@@ -0,0 +1,46 @@
+{% set version = "1.0.2" %}
+
+package:
+  name: deeparg
+  version: '{{version}}'
+
+source:
+  url: https://pypi.io/packages/source/d/deeparg/DeepARG-{{version}}.tar.gz
+  sha256: 921835da1ec8a6caea1c6df0070dcda9fc0fe3b2681e2c5f3c7996c99b96bfe8
+
+build:
+  script: python -m pip install .
+  noarch: python
+  number: 0
+
+requirements:
+  host:
+    - python <3
+    - pip
+  run:
+    - python <3
+    - numpy >=1.16
+    - scipy >=1.2.1
+    - joblib >=0.14.1
+    - biopython >=1.68
+    - ete3 >=3.1.2
+    - tqdm >=4.62.3
+    - nolearn >=0.6.1
+    - lasagne >=0.1
+    - scikit-learn >=0.19.2
+    - theano >=0.8.2
+    - requests >=1.15.1
+    - wget >=1.20.3
+
+test:
+  imports:
+    - deeparg
+  commands:
+    - deeparg -h
+
+about:
+  home: https://bitbucket.org/gusphdproj/deeparg-ss/
+  license: MIT
+  license_family: MIT
+  license_file: "LICENSE.txt"
+  summary: A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes