From d317d0e7badbf656d930e4b1b31af4b3a65b8c64 Mon Sep 17 00:00:00 2001 From: Jennifer Chang Date: Thu, 13 Jun 2024 14:09:40 -0700 Subject: [PATCH] Add outgroups to DENV2 --- nextclade/config/outgroup_denv2.fasta | 4 ++++ nextclade/datasets/denv2/tree.json | 2 +- 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/nextclade/config/outgroup_denv2.fasta b/nextclade/config/outgroup_denv2.fasta index a6b134fc..dbdc2ef5 100644 --- a/nextclade/config/outgroup_denv2.fasta +++ b/nextclade/config/outgroup_denv2.fasta @@ -1,2 +1,6 @@ +>Reconstructed_root_sequence_of_https_nextstrain_org_dengue/denv1/genome +AGTTGTTAGTCTACGTGGACCGACAAGAACAGTTTCGAATCGGAAGCTTGCTTAACGTAGTTCTAACAGTTTTTTATTAGAGAGCAGATCTCTGATGAACAACCAACGGAAAAAGACGGGTCGACCGTCTTTCAATATGCTGAAACGCGCGAGAAACCGCGTGTCAACTGTTTCACAGTTGGCGAAGAGATTCTCAAAAGGATTGCTCTCAGGCCAAGGACCCATGAAATTGGTGATGGCTTTCATAGCATTCCTAAGATTTCTAGCCATACCCCCAACAGCAGGAATTTTGGCTAGATGGGGCTCATTCAAGAAGAATGGAGCGATTAAAGTGTTACGGGGTTTCAAGAAAGAAATCTCAAACATGTTGAACATAATGAACAGGAGGAAAAGATCCGTGACCATGCTCCTTATGCTGCTGCCCACAGCCCTGGCGTTCCATCTGACCACACGAGGGGGAGAGCCGCACATGATAGTTAGCAAGCAGGAAAGAGGAAAGTCACTTTTGTTTAAGACCTCTGCAGGTGTCAACATGTGCACCCTTATTGCGATGGATTTGGGAGAGTTATGTGAGGACACAATGACCTACAAATGCCCCCGGATCACTGAGGCGGAACCAGATGACGTTGACTGTTGGTGCAATGCCACGGACACATGGGTGACCTATGGAACGTGTTCTCAAACTGGCGAACACCGACGAGACAAACGTTCCGTCGCACTGGCCCCACACGTGGGGCTTGGTCTAGAAACAAGAACCGAAACGTGGATGTCCTCTGAAGGCGCTTGGAAACAAATACAAAAAGTGGAGACTTGGGCTCTGAGACACCCAGGATTCACGGTGATAGCCCTTTTTCTAGCACATGCCATAGGAACATCCATCACCCAGAAAGGGATTATTTTCATTTTGCTGATGCTGGTAACACCATCCATGGCCATGCGATGCGTGGGAATAGGCAACAGAGACTTCGTGGAAGGACTGTCAGGAGCAACGTGGGTGGATGTGGTACTGGAGCATGGAAGTTGCGTCACCACCATGGCAAAAAATAAACCAACATTGGACATTGAACTCTTGAAGACGGAGGTCACAAACCCTGCCGTCCTGCGCAAACTGTGCATTGAAGCTAAAATATCAAACACCACCACCGATTCAAGATGTCCAACACAAGGAGAAGCCACACTGGTGGAAGAACAAGACGCGAACTTTGTGTGTCGACGAACGTTCGTGGACAGAGGCTGGGGCAATGGCTGTGGGCTATTCGGAAAAGGTAGCCTAATAACGTGTGCTAAGTTCAAGTGTGTGACAAAACTAGAAGGAAAGATAGTTCAATATGAAAACTTAAAATATTCAGTGATAGTCACCGTCCACACTGGAGACCAGCACCAGGTGGGAAATGAGACCACAGAACATGGAACAACTGCAACCATAACACCTCAAGCTCCTACGTCGGAAATACAGCTGACCGACTACGGAGCCCTTACATTGGATTGCTCACCTAGAACAGGGCTAGACTTTAATGAGATGGTGTTGTTGACAATGAAAGAAAAATCATGGCTTGTCCACAAACAATGGTTTCTAGACTTACCACTGCCTTGGACCTCGGGGGCTTCAACATCCCAAGAGACTTGGAACAGACAAGATTTGCTGGTCACATTTAAGACAGCTCATGCAAAGAAGCAGGAAGTAGTCGTACTAGGATCACAAGAAGGAGCAATGCACACTGCGTTGACTGGAGCGACAGAAATCCAAACGTCAGGAACGACAACAATTTTTGCAGGACACCTGAAATGCAGACTAAAAATGGACAAACTGACTTTAAAAGGGATGTCATATGTGATGTGCACAGGCTCATTCAAGTTAGAGAAAGAAGTGGCTGAGACCCAGCATGGAACTGTTCTAGTGCAGGTTAAATACGAAGGAACAGATGCACCATGCAAGATCCCCTTTTCGACCCAAGATGAGAAAGGAGTAACCCAGAATGGGAGATTGATAACAGCCAACCCCATAGTCACTGACAAAGAAAAACCAGTCAACATTGAGGCAGAACCACCTTTTGGTGAGAGCTACATCGTGGTAGGAGCAGGTGAAAAAGCTTTGAAACTAAGCTGGTTCAAGAAAGGAAGCAGCATAGGGAAAATGTTTGAAGCAACTGCCCGAGGAGCACGAAGGATGGCCATCCTGGGAGACACCGCATGGGACTTCGGTTCTATAGGAGGAGTGTTCACGTCTGTGGGAAAACTGGTACACCAGGTTTTTGGAACTGCATATGGAGTTTTGTTCAGCGGTGTTTCTTGGACCATGAAAATAGGAATAGGGATTCTGCTGACATGGCTAGGATTAAATTCAAGGAGCACGTCCCTTTCGATGACGTGCATTGCAGTTGGCATGGTCACACTGTACCTAGGAGTCATGGTTCAGGCGGACTCGGGATGTGTAATCAACTGGAAAGGCAGAGAACTCAAATGTGGAAGTGGCATTTTTGTCACTAATGAAGTTCACACTTGGACAGAGCAATACAAATTCCAGGCTGACTCCCCAAAGAGACTATCAGCAGCCATTGGGAAGGCATGGGAGGAGGGTGTGTGTGGAATTCGATCAGCCACTCGTCTCGAGAACATCATGTGGAAGCAAATATCAAATGAATTGAACCACATCCTACTTGAAAATGACATGAAATTCACAGTGGTCGTAGGAGATGTTAGTGGAATCTTGGCCCAAGGAAAAAAAATGATTAGGCCACAACCCATGGAACACAAATACTCGTGGAAAAGCTGGGGAAAAGCCAAAATCATAGGAGCAGATGTACAGAACACCACCTTCATCATCGACGGCCCAAACACCCCAGAATGCCCTGATGACCAAAGAGCATGGAACATTTGGGAAGTTGAGGACTATGGATTTGGAATTTTCACGACAAACATATGGTTGAAATTGCGTGACTCCTACACCCAAGTGTGTGACCACCGGCTAATGTCAGCTGCCATCAAGGACAGCAAGGCAGTCCATGCTGACATGGGGTACTGGATAGAAAGTGAAAAGAACGAGACCTGGAAGCTGGCGAGAGCCTCCTTCATAGAAGTTAAGACATGCATCTGGCCAAAATCCCACACTCTATGGAGCAATGGAGTTCTGGAAAGTGAAATGATAATCCCAAAGATATATGGAGGACCAATATCTCAGCACAACTACAGACCAGGATATTTCACACAAACAGCAGGGCCGTGGCACCTAGGCAAGTTGGAACTAGATTTTGATTTGTGTGAAGGTACCACAGTTGTTGTGGATGAACATTGTGGAAATCGAGGACCATCTCTTAGAACCACAACAGTCACAGGAAAGATAATCCATGAATGGTGCTGCAGATCTTGTACGCTACCCCCCTTACGTTTCAAAGGAGAAGACGGGTGTTGGTACGGCATGGAAATCAGACCAGTCAAGGAGAAGGAAGAGAACCTAGTCAAGTCAATGGTCTCTGCAGGGTCAGGAGAAGTGGACAGCTTTTCACTAGGACTGCTATGCATATCAATAATGATTGAAGAGGTGATGAGATCCAGATGGAGTAGAAAAATGCTGATGACTGGAACACTGGCTGTGTTCCTCCTTCTTATAATGGGACAATTGACATGGAATGATCTGATCAGGTTATGCATCATGGTTGGAGCCAATGCTTCAGACAGGATGGGGATGGGAACAACGTACCTAGCTTTGATGGCCACTTTCAAAATGAGACCAATGTTCGCTGTCGGGCTATTATTTCGCAGACTAACATCTAGAGAAGTTCTTCTTCTTACAATTGGATTGAGCCTGGTGGCATCCGTGGAGCTACCAAATTCCTTAGAGGAGCTGGGGGATGGACTTGCAATGGGCATCATGATGTTAAAATTACTGACTGATTTTCAGTCACACCAGCTATGGGCTACCTTGCTGTCCTTGACATTTATCAAAACAACTTTTTCATTGCACTATGCATGGAAGACAATGGCTATGGTACTGTCAATTGTATCTCTCTTCCCTTTATGCCTGTCCACGACCTCTCAAAAAACAACATGGCTTCCGGTGCTGTTGGGATCTCTTGGATGCAAACCACTAACCATGTTTCTTATAACAGAAAACAAAATCTGGGGAAGGAAAAGTTGGCCCCTCAATGAAGGAATTATGGCTGTTGGAATAGTTAGCATTCTACTAAGTTCACTCCTCAAAAATGATGTGCCGCTAGCCGGCCCACTAATAGCTGGAGGCATGCTAATAGCATGTTATGTCATATCCGGAAGCTCAGCCGATTTATCACTGGAGAAAGCGGCTGAGGTCTCCTGGGAAGAAGAAGCAGAACACTCTGGTGCCTCACACAACATACTAGTGGAGGTCCAAGATGATGGAACCATGAAGATAAAAGATGAAGAGAGAGATGACACACTCACCATTCTCCTTAAAGCAACTCTGCTGGCAGTCTCAGGGGTGTACCCAATGTCAATACCAGCGACCCTTTTTGTGTGGTATTTTTGGCAGAAAAAGAAACAGAGATCAGGAGTGCTATGGGACACACCCAGCCCTCCAGAAGTGGAAAGAGCAGTTCTTGATGATGGTATCTATAGAATTTTGCAAAGAGGACTGTTGGGCAGGTCCCAAGTAGGAGTAGGAGTTTTCCAAGAAGGCGTGTTCCACACAATGTGGCACGTCACCAGGGGAGCTGTCCTCATGTATCAAGGGAAGAGGCTGGAACCAAGCTGGGCCAGTGTCAAAAAAGACTTGATCTCATATGGAGGAGGTTGGAGGTTTCAAGGATCCTGGAACACGGGAGAAGAAGTGCAGGTGATTGCTGTTGAACCGGGAAAAAACCCCAAAAATGTACAGACAGCGCCGGGCACCTTCAAGACCCCTGAAGGCGAAGTTGGAGCCATAGCCCTAGATTTTAAACCCGGCACATCTGGATCTCCCATCGTGAACAGAGAGGGAAAAATAGTAGGTCTTTATGGAAATGGAGTGGTGACAACAAGTGGAACCTACGTCAGTGCCATAGCTCAAGCTAAAGCATCACAAGAAGGGCCTCTACCAGAGATTGAGGACGAGGTGTTTAGGAAAAGAAACTTAACAATAATGGACCTACATCCAGGATCGGGAAAAACAAGAAGATATCTTCCAGCCATAGTCCGTGAGGCCATAAAAAGGAAGCTGCGCACGCTAATCTTGGCTCCCACAAGAGTTGTCGCTTCTGAAATGGCAGAGGCGCTCAAGGGAATGCCAATAAGGTATCAGACAACAGCAGTGAAGAGTGAACACACAGGAAAGGAGATAGTTGACCTTATGTGCCACGCCACTTTCACCATGCGTCTCCTGTCTCCCGTGAGAGTTCCCAATTACAACATGATTATCATGGATGAAGCACATTTCACCGATCCAGCCAGCATAGCGGCCAGAGGGTACATCTCAACCCGAGTGGGTATGGGTGAAGCAGCTGCGATCTTTATGACAGCCACTCCCCCAGGATCGGTGGAGGCCTTTCCACAGAGCAATGCAGTTATCCAAGATGAGGAAAGAGACATTCCTGAGAGATCATGGAACTCAGGCTATGACTGGATCACTGATTTCCCAGGTAAAACAGTCTGGTTTGTTCCAAGCATCAAATCAGGAAATGACATTGCCAACTGTTTAAGAAAGAACGGGAAACGGGTGATCCAATTGAGCAGAAAAACCTTTGACACTGAGTACCAGAAAACAAAAAACAACGACTGGGACTATGTCGTCACAACAGACATTTCCGAAATGGGAGCAAACTTCCGGGCCGACAGGGTAATAGACCCAAGGCGGTGTCTGAAACCGGTAATACTAAAAGATGGTCCAGAGCGCGTCATTCTAGCCGGACCGATGCCAGTGACTGTGGCCAGTGCCGCCCAGAGGAGAGGAAGAATTGGAAGGAACCAAAACAAGGAAGGTGATCAGTATATTTACATGGGACAGCCTTTAAACAATGATGAGGACCACGCTCATTGGACAGAAGCAAAAATGCTCCTTGACAATATAAACACACCAGAAGGGATTATCCCAGCCCTCTTTGAGCCGGAGAGAGAAAAGAGTGCAGCAATAGACGGGGAATACAGACTGCGGGGTGAAGCAAGGAAAACGTTCGTGGAGCTCATGAGAAGAGGAGATCTACCTGTCTGGCTATCCTACAAAGTTGCCTCAGAAGGCTTCCAGTACTCCGACAGAAGGTGGTGCTTTGATGGGGAAAGGAACAACCAGGTGTTGGAGGAGAACATGGACGTGGAGATCTGGACAAAAGAAGGAGAAAGAAAGAAACTACGACCCCGCTGGTTGGATGCCAGAACATACTCTGACCCACTGGCTCTGCGCGAGTTTAAAGAGTTTGCAGCAGGAAGAAGAAGCGTCTCAGGTGACCTAATATTAGAAATAGGGAAACTTCCACAACATTTGACGCAAAGGGCCCAGAATGCTTTGGACAACTTGGTCATGTTGCACAATTCCGAACAAGGAGGAAAAGCCTATAGACATGCTATGGAAGAACTACCAGACACCATAGAAACGTTGATGCTCCTAGCTTTGATAGCTGTGTTGACTGGTGGAGTGACGCTGTTCTTCCTATCAGGAAGAGGTCTAGGGAAAACATCCATCGGCCTACTCTGCGTGATGGCCTCAAGCGTACTGTTATGGATGGCCAGTGTGGAGCCCCATTGGATAGCGGCCTCCATCATACTGGAGTTCTTTCTGATGGTGCTGCTTATTCCAGAGCCAGACAGACAGCGCACTCCACAGGACAACCAGCTAGCATATGTGGTGATAGGTTTGTTATTCATGATATTGACAGTGGCAGCCAATGAGATGGGATTATTGGAAACCACAAAGAAAGACCTGGGGATTGGCCATGTAGCTGCTGAAAACCACCACCATGCTACAATGCTGGACGTAGACCTACATCCAGCTTCAGCCTGGACCCTCTATGCAGTGGCCACAACAATTATCACTCCCATGATGAGACACACAATTGAAAACACAACGGCAAATATTTCCCTGACAGCTATTGCAAACCAGGCAGCTATATTGATGGGACTTGACAAGGGATGGCCAATATCGAAGATGGACATAGGAGTTCCACTTCTCGCCTTGGGGTGCTATTCCCAGGTGAACCCGCTGACGCTGACAGCGGCGGTATTGATGCTAGTGGCTCATTACGCCATAATTGGACCTGGACTGCAAGCAAAAGCTACTAGAGAAGCTCAAAAAAGGACAGCGGCCGGAATAATGAAAAATCCAACTGTCGACGGGATTGTTGCAATAGATTTGGATCCTGTGGTTTACGATGCAAAATTTGAAAAACAGCTAGGCCAAATAATGTTGTTGATACTTTGCACATCACAGATTCTCTTGATGCGGACTACATGGGCCTTGTGTGAATCCATCACACTGGCTACTGGACCTCTGACCACTCTTTGGGAGGGATCTCCAGGAAAATTCTGGAACACCACGATAGCGGTGTCCATGGCAAACATTTTCAGGGGAAGTTATCTAGCAGGAGCAGGTCTGGCCTTCTCATTAATGAAATCTCTAGGAGGAGGTAGGAGAGGCACGGGAGCCCAAGGGGAAACACTGGGAGAAAAATGGAAAAGACAGCTAAACCAACTGAGCAAGTCAGAATTCAACACTTACAAAAGGAGTGGGATTATGGAGGTGGATAGATCCGAAGCCAAAGAGGGACTGAAAAGAGGAGAAACAACCAAACATGCAGTGTCGAGAGGAACAGCCAAACTGAGGTGGTTTGTGGAGAGGAACCTTGTGAAACCAGAAGGGAAAGTCATAGACCTCGGTTGTGGAAGAGGTGGCTGGTCATATTATTGCGCTGGGCTGAAGAAAGTCACAGAAGTGAAAGGATACACAAAAGGAGGACCTGGACATGAGGAACCAATCCCAATGGCGACCTATGGATGGAACCTAGTAAAGCTACACTCCGGAAAAGATGTATTCTTTACACCACCTGAGAAATGTGACACCCTTTTGTGTGATATTGGTGAGTCCTCTCCGAACCCAACTATAGAAGAAGGAAGAACGTTACGTGTTCTAAAGATGGTGGAACCATGGCTCAGAGGAAACCAATTTTGCATAAAAATTCTAAATCCCTATATGCCGAGTGTGGTAGAAACTCTGGAGCAAATGCAAAGAAAACATGGAGGAATGCTAGTGCGAAACCCACTCTCAAGAAATTCCACCCATGAAATGTACTGGGTTTCATGTGGAACAGGAAACATTGTGTCAGCAGTAAACATGACATCTAGAATGTTGCTAAATCGATTCACAATGGCTCACAGGAAGCCAACATATGAAAGAGACGTGGACTTAGGCGCTGGAACAAGACATGTGGCAGTGGAACCAGAGGTAGCCAACCTAGATATCATTGGCCAGAGGATAGAGAATATAAAAAATGAACATAAGTCAACATGGCATTATGATGAGGACAATCCATACAAAACATGGGCCTATCATGGATCATATGAGGTCAAGCCATCAGGATCAGCCTCATCCATGGTCAATGGCGTGGTGAGATTGCTCACCAAACCATGGGATGTTATCCCCATGGTCACACAAATAGCCATGACTGACACCACACCCTTTGGACAACAGAGGGTGTTTAAAGAGAAAGTTGACACGCGCACACCAAAAGCAAAACGAGGCACAGCACAAATTATGGAGGTGACAGCCAGGTGGTTATGGGGTTTCCTTTCTAGAAACAAAAAACCCAGAATCTGCACAAGAGAGGAGTTCACAAGAAAAGTTAGGTCAAACGCAGCTATTGGAGCAGTGTTCGTTGATGAAAATCAATGGAACTCAGCAAAAGAAGCAGTGGAAGACGAACGGTTCTGGGACCTTGTGCACAGAGAGAGGGAGCTTCATAAACAGGGAAAATGTGCCACGTGTGTCTACAATATGATGGGGAAGAGAGAGAAAAAATTAGGAGAGTTCGGAAAGGCAAAAGGAAGTCGTGCAATATGGTACATGTGGTTGGGAGCACGCTTTCTAGAGTTCGAAGCCCTTGGTTTCATGAATGAAGATCACTGGTTCAGTAGAGAGAATTCACTCAGTGGAGTGGAAGGAGAAGGACTCCACAAACTTGGATACATACTCAGAGACATATCAAAGATTCCAGGGGGAAATATGTATGCAGATGACACAGCCGGATGGGACACAAGAATAACAGAGGATGATCTTCAGAATGAGGCTAAAATCACTGACATCATGGAGCCCGAACATGCCCTATTGGCTACGTCAATCTTTAAGCTGACCTACCAAAATAAGGTGGTAAGGGTGCAGAGACCAGCAAAAAATGGAACCGTGATGGATGTTATATCCAGACGTGACCAGAGAGGAAGTGGACAGGTCGGAACTTATGGCTTAAACACTTTCACCAACATGGAGGCCCAACTAATAAGACAAATGGAGTCTGAGGGAATCTTTTTACCCAGCGAATTGGAAACCCCAAATCTAGCCGAAAGAGTTCTCGACTGGTTGGAAAAACATGGCGTCGAAAGGCTGAAAAGAATGGCAATCAGCGGAGATGACTGTGTGGTGAAACCAATTGATGACAGGTTCGCAACAGCCTTAACAGCTTTGAATGACATGGGAAAAGTAAGAAAAGACATACCGCAATGGGAACCTTCAAAAGGATGGAATGATTGGCAACAAGTGCCTTTCTGTTCACACCATTTCCACCAGCTGATTATGAAGGATGGGAGGGAGATAGTGGTGCCATGCCGCAACCAAGATGAACTTGTGGGTAGGGCCAGAGTATCACAAGGCGCCGGATGGAGCCTGAGAGAAACTGCATGCCTAGGCAAGTCATATGCACAAATGTGGCAGCTGATGTACTTCCACAGGAGAGACCTGAGACTAGCGGCTAATGCTATCTGTTCAGCCGTTCCAGTTGATTGGGTCCCAACCAGCCGCACCACCTGGTCGATCCATGCCCATCACCAATGGATGACAACAGAAGACATGTTATCAGTGTGGAATAGGGTTTGGATAGAGGAAAACCCATGGATGGAGGATAAAACTCATGTATCCAGTTGGGAAGATGTTCCATACTTAGGAAAAAGGGAAGATCAGTGGTGTGGATCCCTGATAGGCTTAACAGCAAGGGCCACCTGGGCCACTAACATACAAGTGGCCATAAACCAAGTGAGAAGGCTCATTGGGAATGAGAATTATCTAGATTACATGACATCAATGAAGAGATTCAAGAATGAGAGTGATCCCGAAGGGGCACTCTGGTAAGTCAACACATTCACAAAATAAAGGAAAATAAAAAATCAAACAAGGCAAGAAGTCAGGCCGGATTAAGCCATAGTACGGTAAGAGCTATGCTGCCTGTGAGCCCCGTCCAAGGACGTAAAATGAAGTCAGGCCGAAAGCCACGGTTTGAGCAAACCGTGCTGCCTGTGGCTCCATCGTGGGGATGTAAAAACCCGGGAGGCTGCAACCCATGGAAGCTGTACGCATGGGGTAGCAGACTAGTGGTTAGAGGAGACCCCTCCCAAGACACAACGCAGCAGCGGGGCCCAACACCAGGGGAAGCTGTACCCTGGTGGTAAGGACTAGAGGTTAGAGGAGACCCCCCGCACAACAATAAACAGCATATTGACGCTGGGAGAGACCAGAGATCCTGCTGTCTCTACAGCATCATTCCAGGCACAGAACGCCAGAAAATGGAATGGTGCTGTTGAATCAACAGGTTCT +>Reconstructed_root_sequence_of_https_nextstrain_org_dengue/denv3/genome +AGTTGTTAGTCTACGTGGACCGACAAGAACAGTTTCGACTCGGAAGCTTGCTTAACGTAGTGCTGACAGTTTTTTATTAGAGAGCAGATCTCTGATGAACAACCAACGGAAAAAGACGGGAAAACCGTCTATCAATATGCTGAAACGCGTGAGAAACCGTGTGTCAACTGGATCACAGTTGGCGAAGAGATTCTCAAGAGGATTGCTGAACGGCCAAGGACCAATGAAATTGGTTATGGCGTTCATAGCTTTCCTCAGATTTCTAGCCATTCCACCGACAGCAGGAGTCTTGGCTAGATGGGGTACCTTCAAGAAGTCGGGGGCTATTAAGGTCCTAAAAGGCTTCAAGAAGGAGATCTCAAACATGCTGAGCATTATCAACAAACGGAAAAAGACATCGCTCTGTCTCATGATGATGTTACCAGCAACACTTGCTTTCCACTTGACTTCACGAGATGGAGAGCCGCGCATGATTGTGGGGAAGAATGAAAGAGGAAAATCCCTACTTTTTAAGACAGCCTCTGGAATCAACATGTGCACACTCATAGCCATGGATTTGGGAGAGATGTGTGATGACACGGTCACTTACAAATGCCCCCACATTACCGAAGTGGAGCCTGAAGACATTGACTGCTGGTGCAACCTTACATCGACATGGGTGACTTATGGAACGTGCAATCAAGCTGGAGAGCATAGACGCGATAAGAGATCAGTGGCGTTAGCTCCCCATGTCGGCATGGGACTGGACACACGCACCCAAACCTGGATGTCGGCTGAAGGAGCTTGGAGACAAGTCGAGAAGGTAGAGACATGGGCCCTTAGGCACCCAGGGTTCACCATACTAGCCCTATTTCTTGCCCATTACATAGGCACTTCCTTGACCCAGAAAGTGGTTATTTTTATACTACTAATGCTGGTCACCCCATCCATGACAATGAGATGTGTGGGAGTAGGAAACAGAGATTTTGTGGAAGGCCTATCGGGAGCTACGTGGGTTGACGTGGTGCTCGAGCACGGTGGGTGTGTGACTACCATGGCTAAGAACAAGCCCACGCTGGATATAGAGCTTCAGAAGACCGAGGCCACCCAACTGGCGACCCTAAGGAAGCTATGCATTGAGGGAAAAATTACCAACATAACAACCGACTCAAGGTGTCCCACCCAAGGGGAAGCGATTTTACCTGAGGAGCAGGACCAGAACTACGTGTGTAAGCATACATACGTGGACAGAGGCTGGGGAAACGGTTGTGGTTTGTTTGGCAAGGGAAGCTTGGTGACATGCGCGAAATTTCAATGTTTAGAATCAATAGAGGGAAAAGTGGTGCAACATGAGAACCTCAAATACACCGTCATCATCACAGTGCACACAGGAGACCAACACCAGGTGGGAAATGAAACGCAGGGAGTCACGGCTGAGATAACACCCCAGGCATCAACCGCTGAAGCCATCTTACCTGAATATGGAACCCTTGGGCTAGAATGCTCACCACGGACAGGTTTGGATTTCAATGAAATGATCTTATTGACAATGAAGAACAAAGCATGGATGGTACATAGACAATGGTTCTTTGACCTACCTCTACCATGGACATCAGGAGCTACAACAGAAACACCAACCTGGAACAGGAAAGAGCTTCTTGTGACATTCAAAAACGCACATGCAAAAAAACAAGAAGTAGTTGTCCTTGGATCGCAAGAGGGAGCAATGCATACAGCACTGACAGGAGCTACAGAGATCCAAACCTCAGGAGGCACAAGCATTTTTGCGGGGCACTTAAAATGTAGACTCAAGATGGACAAATTGGAACTCAAGGGGATGAGCTATGCAATGTGCTTGAATACCTTTGTGTTGAAGAAAGAAGTCTCCGAAACGCAGCATGGGACAATACTCATTAAGGTTGAGTACAAAGGGGAAGATGCACCCTGCAAGATTCCTTTCTCCACGGAGGATGGACAAGGGAAAGCTCACAATGGCAGACTGATCACAGCCAACCCAGTGGTGACCAAGAAGGAGGAGCCTGTCAATATTGAGGCTGAACCTCCTTTTGGGGAAAGTAATATAGTAATTGGAATTGGAGACAAAGCCTTGAAAATCAACTGGTACAAGAAGGGAAGCTCGATTGGGAAGATGTTCGAGGCCACTGCCAGAGGTGCAAGGCGCATGGCCATCTTGGGAGACACAGCCTGGGACTTTGGATCAGTGGGTGGTGTTTTGAATTCATTAGGGAAAATGGTGCACCAAATATTTGGAAGTGCTTACACAGCCCTATTTAGTGGAGTCTCCTGGATAATGAAAATTGGAATAGGTGTCCTCTTAACCTGGATAGGGTTGAATTCAAAAAACACTTCTATGTCATTTTCATGCATTGCGATAGGAATCATTACACTCTATCTGGGAGCCGTGGTGCAAGCTGACATGGGGTGTGTCATAAACTGGAAAGGCAAAGAACTCAAATGTGGAAGTGGAATTTTCGTCACTAATGAGGTCCACACCTGGACAGAGCAATACAAATTTCAAGCAGACTCCCCCAAAAGACTGGCGACAGCCATTGCAGGCGCTTGGGAGAATGGAGTGTGCGGAATCAGGTCAACAACCAGAATGGAGAACCTCTTGTGGAAGCAAATAGCCAATGAACTGAACTACATATTATGGGAAAACAACATCAAATTAACGGTAGTTGTGGGCGACATAATTGGGGTCTTAGAGCAAGGGAAAAGAACACTAACACCACAACCCATGGAGCTAAAATATTCATGGAAAACATGGGGAAAGGCAAAAATAGTGACAGCTGAAACACAAAATTCCTCTTTCATAATAGATGGGCCAAACACACCGGAGTGTCCAAGTGCCTCAAGAGCATGGAATGTGTGGGAGGTGGAAGATTACGGGTTCGGAGTCTTCACAACCAACATATGGCTGAAACTCCGAGAGGTGTACACCCAACTATGTGACCATAGGCTAATGTCGGCAGCCGTCAAGGATGAGAGGGCCGTACACGCCGACATGGGCTATTGGATAGAAAGCCAAAAGAATGGAAGTTGGAAGCTAGAAAAAGCATCCCTCATAGAGGTGAAAACCTGCACATGGCCAAAATCACACACTCTTTGGAGCAATGGTGTGCTAGAGAGTGACATGATCATCCCAAAGAGTCTAGCTGGTCCTATTTCGCAACACAACCACAGGCCCGGGTACCACACCCAAACGGCAGGACCCTGGCACTTAGGAAAATTGGAGCTGGACTTCAACTATTGTGAAGGAACAACAGTTGTCATCACAGAAAACTGTGGGACAAGAGGCCCATCATTGAGAACAACAACAGTGTCAGGGAAGTTGATACACGAATGGTGTTGCCGCTCGTGCACACTTCCTCCCCTGCGATACATGGGAGAAGACGGCTGCTGGTATGGCATGGAAATTAGACCCATTAATGAGAAAGAAGAGAACATGGTAAAGTCTTTAGCCTCAGCAGGGAGTGGAAAGGTGGACAACTTCACAATGGGTGTCTTGTGTTTGGCAATCCTCTTTGAAGAGGTGATGAGAGGAAAATTTGGGAAAAAACACATGATTGCAGGGGTTCTCTTCACGTTTGTGCTCCTTCTCTCAGGGCAAATAACATGGAGAGACATGGCGCACACACTCATAATGATTGGGTCCAACGCCTCTGACAGAATGGGAATGGGCGTCACTTACCTAGCTTTAATTGCAACATTTAAAATTCAGCCATTCTTGGCTTTGGGATTCTTCCTGAGGAAACTGACATCTAGAGAAAATTTATTGTTGGGAGTTGGGTTGGCCATGGCAACAACGTTACAACTGCCAGAGGACATTGAACAAATGGCGAATGGAATTGCTTTGGGGCTCATGGCTCTTAAACTGATAACACAATTTGAAACATACCAACTATGGACGGCATTAGTCTCCCTAACGTGTTCAAATACAATTTTCACGTTGACTGTTGCCTGGAGAACAGCCACCCTGATTTTGGCCGGAATTTCGCTTTTGCCAGTGTGCCAGTCTTCGAGCATGAGGAAAACAGATTGGCTCCCAATGACTGTGGCAGCTATGGGAGTTCCACCCCTACCACTTTTTATCTTCAGTTTGAAAGATACACTCAAAAGGAGAAGCTGGCCACTGAATGAGGGGGTGATGGCTGTTGGACTTGTGAGCATTCTAGCTAGTTCTCTCCTTAGGAATGATGTGCCCATGGCTGGACCATTAGTGGCTGGGGGCTTGCTGATAGCGTGCTACGTCATAACTGGCACGTCAGCAGACCTCACTGTAGAAAAAGCAGCAGATGTAACATGGGAGGAAGAGGCTGAGCAAACAGGAGTGTCCCACAATTTAATGATCACAGTTGATGATGATGGAACAATGAGAATAAAAGATGATGAGACTGAGAACATCCTAACAGTGCTTTTAAAAACAGCATTACTAATAGTATCAGGCATCTTTCCATACTCCATACCCGCAACACTGTTGGTCTGGCATACTTGGCAAAAGCAAACCCAAAGATCCGGCGTCCTATGGGACGTACCCAGCCCCCCAGAGACACAGAAAGCAGAACTGGAAGAAGGGGTCTATAGGATCAAACAGCAAGGAATTTTTGGGAAAACCCAAGTGGGGGTTGGAGTACAGAAAGAAGGAGTTTTCCACACCATGTGGCACGTCACAAGAGGGGCAGTGTTGACACACAATGGGAAAAGACTGGAACCAAACTGGGCTAGCGTGAAAAAAGATCTGATTTCATACGGAGGAGGATGGAGATTGAGTGCACAATGGCAAAAGGGAGAGGAGGTGCAGGTTATTGCCGTAGAGCCTGGGAAGAACCCAAAGAACTTTCAAACCATGCCAGGCATTTTTCAGACAACAACAGGGGAAATAGGAGCAATTGCACTGGACTTCAAGCCTGGAACTTCAGGATCTCCCATCATAAACAGAGAGGGAAAGGTAGTGGGACTGTATGGCAATGGAGTGGTTACAAAGAATGGTGGCTATGTCAGTGGAATAGCGCAAACAAATGCAGAACCAGACGGACCGACACCAGAGTTGGAAGAAGAGATGTTCAAAAAGCGAAATCTAACCATAATGGATCTTCATCCTGGGTCAGGAAAGACGCGGAAATACCTTCCAGCTATTGTTAGAGAGGCAATCAAGAGACGCTTAAGGACTCTAATTTTGGCACCAACAAGGGTGGTTGCAGCTGAGATGGAAGAAGCATTGAAAGGGCTCCCAATAAGGTATCAAACAACTGCAACAAAATCTGAACACACAGGAAGAGAGATTGTTGATCTAATGTGCCACGCAACGTTCACAATGCGCTTGCTGTCACCAGTCAGGGTTCCAAACTACAACTTGATAATAATGGATGAGGCTCATTTCACAGACCCAGCCAGTATAGCGGCTAGAGGGTACATATCAACTCGTGTAGGAATGGGAGAGGCAGCCGCAATTTTCATGACAGCAACACCCCCTGGAACAGCTGATGCCTTTCCTCAGAGCAACGCTCCAATTCAAGATGAAGAAAGGGACATACCGGAACGCTCATGGAATTCAGGCAATGAATGGATTACCGACTTTGTTGGGAAGACGGTGTGGTTTGTCCCTAGCATCAAAGCCGGAAATGACATAGCAAACTGCTTGCGGAAAAACGGAAAAAAGGTCATTCAACTTAGTAGGAAGACTTTTGACACAGAATATCAAAAGACTAAACTGAATGATTGGGACTTTGTGGTGACAACAGACATTTCAGAAATGGGAGCCAATTTCAAAGCAGATAGAGTGATCGACCCAAGAAGATGTCTCAAGCCAGTGATTTTGACAGATGGACCCGAGCGGGTGATCCTGGCTGGACCAATGCCAGTCACCGTAGCGAGCGCTGCGCAAAGGAGAGGGAGAGTTGGCAGGAACCCACAAAAAGAAAATGACCAGTACATATTCACGGGCCAGCCTCTCAACAATGATGAAGACCATGCTCACTGGACAGAAGCAAAAATGCTGCTGGACAACATCAACACACCAGAAGGGATTATACCAGCTCTCTTTGAACCAGAAAGGGAGAAGTCAGCCGCCATAGACGGCGAATACCGCCTGAAGGGTGAGTCCAGGAAGACCTTCGTGGAACTCATGAGGAGGGGTGACCTCCCAGTTTGGCTAGCCCATAAAGTAGCATCAGAAGGGATCAAATATACAGATAGAAAATGGTGCTTTGATGGAGAACGTAATAATCAAATTTTAGAGGAGAATATGGATGTGGAAATCTGGACAAAGGAAGGAGAAAAGAAAAAATTGAGACCTAGGTGGCTTGATGCCCGCACTTATTCAGATCCCTTAGCACTCAAGGAATTCAAGGATTTTGCAGCTGGCAGAAAGTCAATCGCCCTTGATCTTGTGACAGAAATAGGAAGAGTGCCTTCACACTTAGCCCACAGAACGAGAAACGCCCTGGACAATTTGGTGATGCTGCACACGTCAGAACATGGCGGTAGGGCCTACAGGCATGCAGTGGAGGAACTACCAGAAACAATGGAAACACTCTTACTCCTGGGACTCATGATCTTGTTAACAGGTGGAGCAATGCTTTTCTTGATATCAGGTAAAGGGATTGGAAAGACTTCAATAGGACTCATTTGTGTAATTGCTTCCAGCGGCATGTTATGGATGGCTGATGTCCCACTCCAATGGATCGCGTCGGCTATAGTCCTGGAGTTTTTTATGATGGTGTTGCTCATACCAGAACCAGAAAAGCAGAGAACTCCCCAAGACAACCAACTCGCATATGTCGTGATAGGCATACTTACATTGGCTGCAATAGTAGCAGCCAATGAAATGGGACTGTTGGAAACTACAAAGAGAGATTTAGGAATGTCTAAAGAACCAGGTGTTGTTTCTCCAACCAGCTATTTGGATGTGGACTTGCACCCAGCATCAGCCTGGACATTGTACGCCGTGGCCACAACAGTAATAACACCAATGTTGAGACATACCATAGAGAATTCCACAGCAAATGTGTCCCTGGCAGCTATAGCTAACCAGGCAGTGGTCCTGATGGGTTTAGACAAAGGATGGCCGATATCGAAAATGGACTTAGGCGTACCACTACTGGCACTGGGTTGCTATTCACAAGTGAACCCACTAACTCTCACAGCGGCAGTACTTTTGCTAGTCACACATTATGCTATTATAGGTCCAGGATTGCAGGCAAAAGCCACTCGTGAAGCTCAGAAAAGGACAGCTGCTGGAATAATGAAGAATCCAACGGTGGATGGGATAATGACAATAGACCTAGATCCTGTAATATACGATTCAAAATTTGAAAAGCAACTAGGACAGGTTATGCTCCTGGTTCTGTGTGCAGTTCAACTTTTGTTAATGAGAACATCATGGGCCTTGTGTGAAGCTCTAACCCTAGCCACAGGACCAATAACAACACTCTGGGAAGGATCACCTGGGAAGTTTTGGAACACCACGATAGCTGTTTCCATGGCGAACATCTTTAGAGGGAGCTATTTAGCAGGAGCTGGGCTTGCTTTTTCTATCATGAAATCAGTTGGAACAGGAAAGAGAGGAACAGGGTCACAAGGTGAAACCTTAGGAGAAAAGTGGAAAAAGAAATTAAATCAGTTATCCCGGAAAGAGTTTGACCTTTACAAGAAATCCGGAATCACTGAAGTGGATAGAACAGAAGCCAAAGAAGGGTTGAAAAGAGGAGAAATAACACACCATGCCGTGTCCAGAGGCAGCGCAAAACTTCAATGGTTCGTGGAGAGAAACATGGTCATTCCCGAAGGAAGAGTCATAGACTTAGGCTGTGGAAGAGGAGGCTGGTCATATTACTGTGCAGGACTGAAAAAAGTTACAGAAGTGCGAGGATACACAAAAGGCGGCCCAGGACACGAAGAACCAGTACCTATGTCTACATACGGATGGAACATAGTCAAGTTAATGAGTGGAAAGGATGTGTTTTATCTTCCACCTGAAAAGTGTGATACCCTATTGTGTGACATTGGAGAATCTTCACCAAGCCCAACAGTGGAAGAAAGCAGAACCATAAGAGTCTTGAAGATGGTTGAACCATGGCTAAAAAACAACCAGTTTTGCATTAAAGTATTGAACCCTTACATGCCAACTGTGATTGAGCACCTAGAAAGACTACAAAGGAAACATGGAGGAATGCTTGTGAGAAATCCACTCTCACGAAACTCCACGCACGAAATGTACTGGATATCCAATGGTACAGGCAACATCGTCTCTTCAGTCAACATGGTATCCAGATTGCTACTGAACAGATTCACAATGACACACAGGAGACCCACCATAGAGAAAGATGTGGATTTAGGAGCAGGAACCCGACATGTCAATGCGGAACCAGAAACACCCAACATGGATGTCATTGGGGAAAGAATAAAAAGGATCAAGGAGGAGCATAGTTCAACATGGCACTATGATGATGAAAATCCTTACAAAACGTGGGCTTACCATGGATCCTATGAAGTCAAAGCCACAGGCTCAGCCTCCTCCATGATAAATGGAGTCGTGAAACTCCTCACAAAACCATGGGATGTGGTGCCCATGGTGACACAGATGGCAATGACAGATACAACCCCATTTGGCCAGCAAAGAGTTTTTAAAGAGAAAGTGGACACCAGGACACCCAGGCCCATGCCAGGAACAAGAAAGGTTATGGAGATCACAGCGGAGTGGCTTTGGAGAACCCTGGGAAGGAACAAAAGACCCAGATTATGCACAAGGGAGGAGTTCACAAAAAAGGTCAGAACCAACGCAGCTATGGGCGCCGTTTTCACAGAGGAGAACCAATGGGACAGTGCGAGAGCTGCTGTTGAGGACGAAGAATTTTGGAAACTTGTGGACAGAGAACGTGAACTCCACAAATTGGGCAAGTGTGGAAGCTGCGTTTACAACATGATGGGCAAGAGAGAGAAGAAACTTGGAGAGTTTGGCAAAGCAAAAGGCAGTAGAGCTATATGGTACATGTGGTTGGGAGCCAGGTACCTTGAGTTCGAGGCACTCGGATTCTTAAATGAAGACCACTGGTTCTCGCGTGAAAACTCTTACAGTGGAGTAGAAGGAGAAGGACTGCACAAGCTGGGATACATCTTAAGAGATATTTCCAAGATACCCGGAGGAGCTATGTATGCTGATGACACAGCTGGTTGGGACACAAGAATAACAGAAGATGACCTGCACAATGAGGAAAAAATCACACAGCAAATGGACCCTGAACACAGGCAGTTAGCGAACGCTATATTCAAGCTCACATACCAAAACAAAGTGGTCAAAGTTCAACGACCAACTCCAAAGGGCACGGTAATGGACATCATATCTAGGAAAGACCAAAGAGGCAGTGGACAGGTGGGAACTTATGGTCTGAATACATTCACCAACATGGAAGCCCAGTTAATCAGACAAATGGAAGGAGAAGGTGTGTTGTCAAAGGCAGACCTCGAGAACCCTCATCTGCTAGAGAAGAAAATTACACAATGGTTGGAAACCAAAGGAGTGGAGAGGTTAAAAAGAATGGCCATCAGCGGGGATGATTGCGTAGTGAAACCAATCGATGACAGGTTCGCCAATGCCCTGCTTGCCCTGAACGATATGGGAAAGGTTAGGAAGGACATACCTCAATGGCAGCCATCAAAGGGATGGCATGATTGGCAACAGGTCCCTTTCTGCTCCCACCACTTTCATGAATTGATCATGAAAGATGGAAGAAAGTTGGTAGTTCCCTGCAGACCCCAGGACGAACTAATAGGAAGAGCGAGAATCTCTCAAGGAGCAGGATGGAGCCTTAGAGAAACTGCATGTCTAGGGAAAGCCTACGCTCAAATGTGGACTCTCATGTATTTTCACAGAAGAGATCTTAGACTAGCATCCAACGCCATATGTTCAGCAGTACCAGTCCATTGGGTCCCCACAAGCAGAACGACATGGTCTATTCATGCTCACCATCAGTGGATGACTACAGAAGACATGCTTACTGTCTGGAACAGGGTGTGGATAGAGGACAATCCATGGATGGAAGACAAAACTCCAGTCACAACTTGGGAAGATGTTCCATATCTAGGGAAGAGAGAAGACCAATGGTGCGGATCACTCATTGGTCTCACTTCCAGAGCAACCTGGGCCCAGAACATACTCACAGCAATCCAACAGGTGAGAAGCCTTATAGGCAATGAAGAGTTTCTGGACTACATGCCTTCGATGAAGAGATTCAGGAAGGAGGAGGAGTCAGAGGGAGCCATTTGGTAAACGCAGGAAGTGAAAAAGAGGCAAACTGTCAGGCCACCTTAAGCCACAGTACGGAAGAAGCTGTGCAGCCTGTGAGCCCCGTCCAAGGACGTTAAAAGAAGAAGTCAGGCCCAAAAGCCACGGTTTGAGCAAACCGTGCTGCCTGTAGCTCCGTCGTGGGGACGTAAAGCCTGGGAGGCTGCAAACCGTGGAAGCTGTACGCACGGTGTAGCAGACTAGCGGTTAGAGGAGACCCCTCCCATGACACAACGCAGCAGCGGGGCCCGAGCACTGAGGGAAGCTGTACCTCCTTGCAAAGGACTAGAGGTTAGAGGAGACCCCCCGCAAATAAAAACAGCATATTGACGCTGGGAGAGACCAGAGATCCTGCTGTCTCCTCAGCATCATTCCAGGCACAGAACGCCAGAAAATGGAATGGTGCTGTTGAATCAACAGGTTCT >Reconstructed_root_sequence_of_https_nextstrain_org_dengue/denv4/genome AGTTGTTAGTCTGTGTGGACCGACAAGGACAGTTCCAAATCGGAAGCTTGCTTAACACAGTTCTAACAGTTTGTTTAAATAGAGAGCAGATCTCTGGAAAAATGAACCAACGAAAAAAGGTGGTTAGACCGCCTTTCAATATGCTGAAACGCGAGAGAAACCGCGTATCAACCCCTCAAGGGTTGGTGAAGAGATTCTCAACCGGACTGTTTTCCGGGAAAGGACCCTTACGGATGGTGCTAGCATTCATCACGTTTTTGCGAGTCCTTTCCATCCCACCAACAGCAGGGATTCTGAAAAGATGGGGACAGTTGAAGAAAAACAAGGCCATCAAGATACTGACTGGATTCAGGAAGGAGATAGGCCGCATGCTGAACATCTTGAACGGGAGAAAGAGGTCAACAATAACATTGCTATGCTTGATTCCCACCGTAATGGCATTCCACTTGTCAACAAGAGATGGCGAACCCCTTATGATAGTAGCAAAACACGAAAGGGGGAGACCTCTCTTGTTTAAGACAACAGAAGGAATCAACAAATGCACTCTTATTGCCATGGACTTGGGTGAAATGTGTGAGGACACCGTCACGTATAAATGCCCTCTACTGGTCAACACCGAACCTGAAGACATTGATTGCTGGTGCAATCTCACGTCTACCTGGGTCATGTATGGGACATGTACCCAGAGCGGAGAACGGAGACGAGAGAAGCGCTCAGTAGCTTTAACACCACATTCAGGAATGGGATTGGAAACAAGGGCTGAGACATGGATGTCATCGGAAGGGGCTTGGAAACATGCCCAGAGAGTGGAGAGCTGGATACTCAGAAACCCAGGATTCGCGCTCTTGGCAGGATTTATGGCTTATATGATTGGGCAAACAGGAATCCAGCGAACTGTCTTCTTTGTTCTAATGATGCTGGTCGCTCCATCCTACGGAATGCGATGCGTAGGAGTGGGGAACAGAGATTTTGTGGAAGGAGTCTCAGGTGGAGCATGGGTCGATCTGGTGCTAGAACACGGAGGATGTGTCACAACCATGGCCCAGGGAAAACCAACCTTGGATTTTGAATTGATCAAGACAACAGCCAAGGAAGTGGCTCTGTTAAGAACTTATTGCATTGAAGCCTCGATATCAAACATAACCACGGCAACAAGATGTCCAACGCAAGGAGAACCTTATCTCAAAGAGGAACAAGACCAACAGTACATTTGCCGGAGAGATGTGGTAGACAGAGGGTGGGGCAATGGCTGTGGCCTGTTTGGAAAAGGAGGAGTTGTGACATGTGCAAAGTTTTCATGCTCGGGGAAGATAACAGGCAACTTGGTCCAAATTGAAAACCTTGAATACACAGTGGTTGTGACAGTCCACAATGGAGACACCCACGCAGTAGGAAATGACACATCCAACCATGGAGTGACAGCCACGATAACTCCCAGGTCACCATCGGTAGAAGTTAAATTACCGGACTATGGAGAACTAACACTCGATTGTGAACCCAGGTCCGGAATTGACTTTAATGAGATGATTCTGATGAAAATGAAAAAGAAAACGTGGCTTGTGCACAAGCAATGGTTTTTGGATCTACCTCTGCCATGGACAGCAGGAGCAGACACATCAGAAGTCCATTGGAATTATAAAGAGAGAATGGTGACATTCAAGGTTCCTCATGCCAAGAGACAGGATGTGACAGTGCTAGGATCTCAGGAAGGAGCCATGCATTCTGCCCTCACCGGAGCCACAGAAGTGGATTCCGGTGATGGAAACCACATGTTTGCAGGACATCTAAAGTGCAAAGTACGCATGGAGAAATTGAGAATCAAGGGAATGTCATACACGATGTGCTCAGGAAAGTTCTCAATTGACAAGGAGATGGCAGAAACACAGCATGGGACAACAGTGGTGAAAGTCAAGTATGAAGGTACTGGAGCTCCATGCAAAGTCCCCATAGAGATAAGAGATGTGAACAAGGAAAAAGTGGTTGGGCGCATCATTTCATCTACTCCTTTTGCTGAGAATACCAACAGTGTAACCAATATTGAATTAGAACCCCCCTTTGGGGACAGCTACATAGTGATAGGTGTTGGAGACAGTGCATTAACACTCCATTGGTTTAGGAAAGGGAGTTCCATTGGCAAGATGTTTGAGTCCACATACAGAGGTGCAAAGCGAATGGCCATTCTAGGTGAAACAGCTTGGGATTTTGGTTCTGTTGGTGGACTGTTCACATCATTGGGAAAAGCTGTGCACCAGGTTTTTGGTAGTGTCTACACAACTATGTTTGGAGGAGTCTCATGGATGGTTAGAATCCTAATTGGGTTCTTAGTGTTGTGGATCGGCACGAACTCAAGAAACACTTCAATGGCAATGACGTGCATAGCTGTTGGAGGAATCACTCTGTTTCTGGGTTTCACGGTTCAAGCAGACATGGGTTGTGTGGTGTCATGGAGTGGGAAAGAATTGAAATGTGGAAGTGGAATTTTTGTGATTGACAACGTGCACACTTGGACAGAACAGTACAAATTTCAACCAGAGTCCCCAGCGAGACTAGCGTCCGCAATATTGAATGCCCACAAAGATGGGGTCTGTGGAATTAGATCAACCACGAGGCTGGAAAATGTCATGTGGAAACAAATAACCAACGAGCTAAACTATGTTCTCTGGGAAGGAGGACATGACCTCACTGTGGTGGCCGGGGATGTGAAAGGGGTGTTGACCAAAGGCAAGAGAGCACTCACACCTCCAGTGAATGATTTGAAATATTCATGGAAGACATGGGGGAAAGCAAAAATCTTTACTCCAGAAGCAAGAAATAGCACATTCTTGATAGACGGACCAGACACCTCCGAATGCCCCAATGAACGAAGAGCATGGAACTTTCTTGAGGTAGAAGACTATGGATTTGGCATGTTCACGACCAACATATGGATGAAATTTCGAGAAGGAAGTTCAGAAGTGTGTGACCACAGGTTAATGTCAGCGGCAATCAAAGATCAGAAAGCCGTGCATGCTGACATGGGCTATTGGATAGAGAGCTCAAAAAACCAGACCTGGCAGATAGAGAAAGCATCCCTTATTGAAGTGAAAACATGTCTGTGGCCCAAGACTCACACATTGTGGAGCAATGGAGTGCTGGAAAGCCAGATGCTCATTCCAAAAGCATATGCAGGCCCCTTTTCACAGCACAATTACCGCCAGGGCTATGCCACGCAGACCATGGGCCCATGGCACTTGGGCAAATTGGAAATAGACTTTGGAGAATGCCCCGGAACAACAGTCACAATTCAGGAGGATTGTGACCACAGAGGCCCATCTTTGAGGACCACCACTGCATCTGGAAAATTGGTCACACAGTGGTGCTGCCGCTCCTGCACGATGCCTCCCTTAAGGTTTTTGGGAGAGGATGGGTGTTGGTATGGGATGGAAATTAGGCCCTTAAGTGAAAAAGAAGAGAACATGGTCAAATCACAGGTGTCGGCCGGACAGGGTTCATCAGAAACTTTTTCTATGGGGCTGTTATGTCTGACCCTGTTCATGGAAGAATGCTTGAGGAGAAGAGTCACTAGGAAACACATGATATTGGTTGTGGTGACCACCCTTTGTGCCATCATCCTAGGAGGTCTCACGTGGATGGACTTACTACGAGCCATTATCATGTTAGGGGACACCATGTTTGGTAGAATGGGAGGACAGATTCACCTAGCCATCATGGCAGTGTTCAAGATGTCACCAGGATACGTGCTGGGTGTGTTTTTAAGGAAACTCACTTCAAGAGAGACAGCACTAATGGTGATAGGAATGGCCATGACAACGGTGTTTTCAATTCCACATGACCTTATGGAATTCATTGATGGAATATCATTGGGGCTAATCTTGCTGAAAATGGTAACACATTTTGACAACACCCAAGTGGGAACTTTAGCCCTTTCCTTAACTTTCATAAGATCAACAATGCCATTGATCATGGCTTGGAGGACCATCATGGCTGTGTTGTTTGTGGTCACACTCATTCCTTTATGTAGGACAAGCTGTCTTCAAAAGCAGTCCCACTGGGTAGAAATAACAGCAATCATCTTAGGAGCCCAGGCTCTGCCAGTGTACTTAATGACTCTCATGAAAGGAGCCTCAAAAAGATCTTGGCCTCTTAACGAGGGCATAATGGCTGTGGGCTTGGTCAGTCTCTTGGGAAGCGCCCTTCTAAAGAATGATGTCCCTTTGGCTGGTCCAATGGTGGCAGGAGGTTTACTTCTGGCAGCCTACGTGATGAGTGGTAGCTCAGCAGACCTGTCACTAGAGAAGGCCGCCAATGTGCAGTGGGATGAGATGGCAGACATAACAGGCTCAAGCCCAATCATAGAAGTGAAGCAGGATGAAGATGGCTCTTTCTCCATACGGGACGTCGAGGAAACCAACATGATAACCCTTTTGGTGAAACTGGCACTGATAACTGTGTCAGGTCTCTACCCCTTGGCAATTCCAGTCACAATGACTTTATGGTACATGTGGCAAGTGAAAACACAAAGATCAGGAGCCCTGTGGGACGTTCCCTCACCCGCTACCGCTCAGAAAGCCACACTGACTGAAGGAGTGTACAGGATCATGCAAAGAGGGTTGTTTGGGAAAACTCAGGTTGGAGTAGGGATACACATGGAAGGTGTATTTCACACAATGTGGCATGTAACAAGAGGATCAGTGATCTGCCATGAGACTGGGAGATTGGAGCCATCTTGGGCTGACGTCAGGAACGACATGATATCATACGGTGGGGGATGGAGGCTCGGAGACAAATGGGACAAAGAAGAAGATGTTCAGGTCCTAGCCATAGAACCAGGAAAAAATCCGAAACATGTCCAAACGAAACCCGGCCTTTTCAAGACCCTAACTGGAGAAATTGGAGCAGTAACATTGGATTTCAAACCCGGAACATCTGGTTCTCCCATCATTAACAAGAAAGGAAAAGTTATCGGACTCTATGGAAATGGAGTAGTTACCAAATCAGGTGATTACGTCAGTGCCATAACGCAAGCCGAAAGAATTGGTGAGCCAGATTATGAAGTGGATGAGGACATCTTTCGAAAGAAAAGATTAACCATAATGGACTTACACCCCGGAGCTGGCAAGACAAAAAGAATTCTCCCATCAATAGTCAGAGAAGCTCTAAAAAGGAGGCTGCGAACCCTGATTTTGGCTCCCACGAGAGTGGTGGCAGCCGAGATGGAAGAGGCCCTTCGCGGACTACCAATCCGTTATCAGACCCCAGCTGTGAAATCAGAACACACAGGAAGAGAGATTGTAGACCTCATGTGTCATGCAACCTTCACAACAAGACTCTTGTCATCAACCAGAGTTCCAAATTACAACCTCATAGTAATGGATGAAGCGCATTTCACAGACCCTTCTAGTGTCGCAGCTAGAGGATACATCTCAACCAGGGTGGAAATGGGAGAGGCAGCAGCCATCTTCATGACTGCAACCCCTCCCGGAGCAACAGATCCCTTCCCCCAGAGCAACAGCCCAATAGAAGACATCGAGAGAGAAATTCCAGAAAGGTCATGGAATACAGGATTCGACTGGATAACAGACTACCAAGGGAAGACTGTGTGGTTTGTTCCCAGCATAAAAGCTGGAAATGACATTGCAAATTGCTTGAGAAAGTCGGGAAAGAAGGTGATCCAGTTGAGTAGGAAAACCTTTGACACAGAGTATCCAAAAACGAAACTCACAGACTGGGATTTTGTGGTCACCACAGACATATCTGAAATGGGGGCCAATTTTAGAGCTGGGAGAGTGATAGACCCCAGGAGATGCCTCAAGCCAGTCATCCTAACAGATGGGCCAGAGAGAGTCATTTTGGCAGGTCCCATTCCAGTGACTCCAGCAAGCGCTGCTCAGAGAAGAGGGCGAATAGGTAGAAACCCAGCACAAGAAGACGACCAGTATGTCTTCTCTGGAGACCCATTGAAAAATGATGAAGATCATGCCCACTGGACAGAAGCAAAGATGCTGCTTGACAATATCTACACCCCGGAAGGGATCATTCCAACATTGTTTGGTCCGGAAAGGGAAAAAACCCAAGCCATTGATGGAGAGTTTCGCCTCAGAGGGGAACAAAGGAAGACTTTTGTGGAATTAATGAGGAGAGGAGACCTTCCGGTGTGGCTGAGCTATAAGGTAGCTTCAGCTGGTATTTCTTACAAAGACCGGGAATGGTGCTTCACAGGGGAAAGGAATAACCAAATTTTAGAAGAAAACATGGAGGTTGAAATTTGGACTAGAGAGGGAGAAAAGAAAAAACTAAGACCAAAATGGTTAGATGCACGTGTCTATGCTGACCCCATGGCTTTGAAGGATTTCAAGGAGTTTGCTAGTGGAAGAAAGAGCATAACCCTTGACATCCTGACAGAGATTGCCAGCTTGCCAACTTACCTTTCCTCTAGGGCCAAGCTCGCCCTTGACAACATAGTCATGCTCCACACAACAGAAAGGGGAGGGAGGGCCTACCAACACGCCCTGAACGAACTCCCGGAGTCATTGGAAACACTCATGCTTGTAGCTTTATTAGGTGCTATGACAGCAGGCATCTTCCTGTTTTTTATGCAAGGAAAAGGGATAGGGAAACTGTCAATGGGTTTGATAGCTATTGCGGTAGCTAGTGGCTTACTCTGGGTAGCAGAAATTCAGCCCCAGTGGATAGCGGCCTCAATCATACTGGAGTTTTTTCTCATGGTGCTGTTGATACCAGAACCAGAAAAACAAAGGACCCCACAAGACAACCAGTTGATCTATGTCATACTGGCCATTCTCACCATTATTGGTCTCATAGCAGCCAACGAGATGGGGCTGATTGAAAAAACAAAAACGGATTTTGGGTTTTACCAGGTAAAAACAGAAACCACCATCCTCGATGTGGATTTGAGACCAGCTTCAGCATGGACGCTCTATGCAGTAGCCACCACTATTCTGACTCCCATGCTGAGACACACCATAGAAAACACATCTGCCAACCTATCTCTGGCGGCCATTGCCAATCAAGCAGCTGTCCTAATGGGGCTTGGAAAAGGATGGCCGCTCCACAGAATGGACCTTGGTGTGCCGCTGTTAGCAATGGGATGTTATTCTCAAGTGAACCCAACAACTTTGACAGCATCCTTAGTCATGCTTTTAGTCCATTATGCAATAATAGGTCCAGGATTGCAGGCAAAAGCCACAAGAGAGGCTCAGAAAAGGACAGCTGCTGGGATCATGAAGAACCCCACGGTGGATGGAATAACAGTAATAGATCTAGAACCAATATCTTATGACCCAAAGTTTGAAAAGCAATTAGGGCAGGTCATGCTACTAGTCTTGTGTGCTGGACAACTACTCTTGATGAGAACAACATGGGCTTTCTGTGAAGTCTTGACTTTGGCCACAGGACCAGTCTTAACTTTGTGGGAGGGCAACCCGGGAAGATTTTGGAACACGACTATAGCCGTATCCACTGCCAACATTTTCAGGGGAAGCTACTTGGCGGGAGCTGGACTGGCTTTCTCACTCATAAAGAATGCACAAACCCCCAGGAGGGGAACTGGGACCACAGGAGAGACACTGGGAGAGAAGTGGAAGAGACAGCTAAACTCATTAGATAGGAAGGAGTTTGAAGAGTACAAGAGAAGTGGAATACTAGAAGTGGACAGGACTGAAGCCAAGTCTGCCCTGAAAGATGGGTCTAAAATCAAGCATGCAGTGTCCAGAGGGTCCAGCAAGATCAGATGGATTGTTGAAAGAGGGATGGTAAAGCCAAAAGGGAAAGTTGTGGATCTTGGTTGCGGGAGAGGAGGATGGTCGTATTACATGGCGACACTCAAGAACGTGACTGAGGTGAAAGGGTACACGAAAGGAGGTCCAGGACATGAAGAACCGATTCCCATGGCTACCTATGGCTGGAATTTGGTCAAGCTCCATTCAGGGGTTGACGTGTTCTACAAACCCACTGAGCAAGTGGACACCCTGCTCTGTGATATTGGAGAGTCATCTTCTAATCCGACAATAGAGGAAGGAAGAACATTAAGAGTTCTGAAGATGGTGGAGCCATGGCTCTCTTCAAAACCTGAATTCTGCATCAAAGTCCTTAACCCCTACATGCCAACAGTCATAGAAGAACTGGAGAAACTGCAGAGAAAGCATGGTGGAAGTCTTATCAGATGCCCGCTATCCAGGAATTCCACTCATGAGATGTATTGGGTGTCAGGTGCGTCGGGAAACATCGTGAGCTCTGTGAACACAACATCAAAGATGCTGTTGAACAGGTTTACCACGAGGCATAGGAAACCCACCTATGAGAAGGACGTAGACCTTGGAGCAGGAACAAGAAGTGTCTCCACTGAAACAGAAAAACCAGACATGACAATCATTGGGAGAAGGCTTCAGCGATTGCAAGAAGAGCACAAAGAAACTTGGCACTATGATCAGGAAAATCCATACAGAACCTGGGCGTATCATGGAAGCTATGAAGCTCCTTCGACAGGCTCAGCATCCTCCATGGTAAACGGGGTAGTAAAACTGCTGACAAAACCTTGGGACGTGATTCCAATGGTGACCCAGTTAGCCATGACAGACACAACCCCCTTTGGGCAACAAAGAGTGTTTAAAGAGAAGGTGGACACCAGAACACCACAACCAAAACCAGGCACACGAGTGGTTATGACCACAACAGCCAATTGGCTGTGGGCCCTCCTTGGGAGGAAGAAAAATCCCAGACTGTGCACGAGGGAAGAGTTCATCTCAAAAGTTAGGTCAAACGCAGCCATAGGTGCAGTCTTTCAGGAAGAACAGGGATGGACATCAGCCAGTGAAGCTGTGAATGACAGCCGGTTTTGGGAACTGGTTGACAAAGAAAGGGCTCTGCACCAGGAAGGGAAATGTGAATCGTGTGTCTACAACATGATGGGAAAACGTGAGAAAAAACTAGGAGAGTTTGGTAGAGCCAAAGGAAGCCGAGCAATCTGGTACATGTGGCTGGGAGCGCGGTTTCTGGAATTTGAAGCCCTGGGTTTCTTAAATGAAGATCACTGGTTTGGCAGAGAAAATTCATGGAGTGGAGTGGAAGGAGAAGGTCTGCATAGATTGGGATACATCCTAGAGGACATAGACAAGAAGGATGGAGACCTGATGTATGCTGATGACACAGCAGGTTGGGACACAAGAATCACTGAAGATGACCTTCTAAATGAAGAACTGATCACGGAACAGATGGCCCCTCATCATAAGATCTTAGCCAAAGCCATTTTCAAACTAACTTATCAAAACAAAGTGGTAAAAGTCCTCAGACCCACACCGAAAGGAGCGGTGATGGACATCATATCCAGGAAAGACCAAAGAGGTAGTGGACAGGTTGGAACATATGGTTTGAACACATTCACCAACATGGAAGTACAACTCATCCGCCAAATGGAAGCTGAAGGAGTCATCACACAAGATGACATGCAGAACCCAAAAGGGCTGAAAGAAAGAGTTGAGAAATGGCTGAAAGAGTGTGGTGTCGACAGGTTGAAGAGGATGGCAATCAGTGGAGATGATTGTGTGGTGAAGCCCCTGGATGAGAGGTTCAGCACTTCCCTCCTCTTCTTGAACGACATGGGAAAGGTGAGGAAAGACATTCCGCAGTGGGAACCATCCAAGGGATGGAAAAATTGGCAAGAGGTTCCTTTTTGCTCCCACCACTTTCACAAGATCTTCATGAAGGATGGCCGCTCACTAGTTGTTCCATGTAGAAACCAGGATGAACTGATAGGGAGAGCCAGAATCTCGCAGGGGGCTGGATGGAGCTTAAAAGAAACAGCCTGTCTGGGCAAAGCTTACGCCCAGATGTGGTCGCTCATGTATTTTCACAGAAGGGACCTGCGTTTAGCCTCCATGGCCATATGCTCAGCAGTTCCAACGGAATGGTTTCCAACAAGCAGAACAACATGGTCAATCCACGCCCACCATCAGTGGATGACCACTGAAGACATGCTCAAAGTGTGGAACAGAGTGTGGATAGAAGACAACCCTAACATGACTGACAAAACTCCAGTCCATTCGTGGGAAGACATACCTTACCTAGGGAAAAGAGAGGATTTGTGGTGTGGATCCTTGATTGGACTTTCTTCCAGAGCCACCTGGGCGAAAAACATTCACACAGCCATAACCCAAGTCAGGAACCTGATCGGGAAAGAGGAGTATGTGGATTACATGCCAGTCATGAAAAGATACAGCGCTCCTTTCGAGAGTGAAGGAGTTCTGTAATTACCAACAACAAACACCAAAGCCTATTGAAGTCAGGCCACTTGTGCCACGGCTTGAGCAAACCGTGCTGCCTGTAGCTCCGCCAATAACGGGAGGCGTAAAAATTCCCAGGGAGGCCATGCGCCACGGAAGCTGTACGCGTGGCATATTGGACTAGCGGTTAGAGGAGACCCCTCCCATCACTGACAAAACGCAGCAAAAGGGGGCCCGAAGCCAGGAGGAAGCTGTACTCCTGGTGGAAGGACTAGAGGTTAGAGGAGACCCCCCCAACACAAAAACAGCATATTGACGCTGGGAAAGACCAGAGATCCTGCTGTCTCTGCAACATCAATCCAGGCACAGAGCGCCGCAAGATGGATTGGTGTTGTTGATCCAACAGGTTCT diff --git a/nextclade/datasets/denv2/tree.json b/nextclade/datasets/denv2/tree.json index 9be2f173..861e9cd4 100644 --- a/nextclade/datasets/denv2/tree.json +++ b/nextclade/datasets/denv2/tree.json @@ -1 +1 @@ -{"version": "v2", "meta": {"title": "Real-time tracking of dengue virus evolution", "updated": "2024-06-10", "build_url": "https://github.com/nextstrain/dengue", "maintainers": [{"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}], "display_defaults": {"map_triplicate": true, "color_by": "clade_membership"}, "genome_annotations": {"nuc": {"end": 10723, "start": 1, "strand": "+", "type": "##sequence-region pragma", "seqid": "resources/denv2/genome_annotation.gff3"}, "2K": {"end": 6825, "seqid": "resources/denv2/genome_annotation.gff3", "start": 6757, "strand": "+", "type": "gene"}, "C": {"end": 438, "seqid": "resources/denv2/genome_annotation.gff3", "start": 97, "strand": "+", "type": "gene"}, "E": {"end": 2421, "seqid": "resources/denv2/genome_annotation.gff3", "start": 937, "strand": "+", "type": "gene"}, "M": {"end": 936, "seqid": "resources/denv2/genome_annotation.gff3", "start": 439, "strand": "+", "type": "gene"}, "NS1": {"end": 3477, "seqid": "resources/denv2/genome_annotation.gff3", "start": 2422, "strand": "+", "type": "gene"}, "NS2A": {"end": 4131, "seqid": "resources/denv2/genome_annotation.gff3", "start": 3478, "strand": "+", "type": "gene"}, "NS2B": {"end": 4521, "seqid": "resources/denv2/genome_annotation.gff3", "start": 4132, "strand": "+", "type": "gene"}, "NS3": {"end": 6375, "seqid": "resources/denv2/genome_annotation.gff3", "start": 4522, "strand": "+", "type": "gene"}, "NS4A": {"end": 6756, "seqid": "resources/denv2/genome_annotation.gff3", "start": 6376, "strand": "+", "type": "gene"}, "NS4B": {"end": 7569, "seqid": "resources/denv2/genome_annotation.gff3", "start": 6826, "strand": "+", "type": "gene"}, "NS5": {"end": 10269, "seqid": "resources/denv2/genome_annotation.gff3", "start": 7570, "strand": "+", "type": "gene"}, "pr": {"end": 711, "seqid": "resources/denv2/genome_annotation.gff3", "start": 439, "strand": "+", "type": "gene"}}, "colorings": [{"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "country", "title": "Country", "type": "categorical", "scale": [["Saudi Arabia", "#5E1D9D"], ["Pakistan", "#4B25B0"], ["Maldives", "#4929B5"], ["India", "#472EB9"], ["Sri Lanka", "#4432BD"], ["Nepal", "#4236C1"], ["Bangladesh", "#403BC5"], ["Myanmar", "#4040C6"], ["Thailand", "#3F45C8"], ["Malaysia", "#3F4BCA"], ["Laos", "#3F50CC"], ["Singapore", "#3F56CE"], ["China", "#3E5BD0"], ["Cambodia", "#3F60D0"], ["Vietnam", "#4065CF"], ["Indonesia", "#416ACF"], ["Brunei", "#426FCE"], ["Taiwan", "#4274CE"], ["Philippines", "#4379CD"], ["South Korea", "#4681C9"], ["French Polynesia", "#4989C4"], ["Palau", "#4B8DC2"], ["Australia", "#4C91BF"], ["Papua New Guinea", "#4E95BD"], ["Fiji", "#56A0AE"], ["Senegal", "#59A3AA"], ["Mauritania", "#5DA8A3"], ["C\u00f4te d'Ivoire", "#60AA9F"], ["Burkina Faso", "#65AD96"], ["Ghana", "#68AF92"], ["Benin", "#6EB38A"], ["Niger", "#74B582"], ["Cameroon", "#7EB976"], ["Angola", "#81BA72"], ["Democratic Republic of the Congo", "#85BA6F"], ["Egypt", "#89BB6B"], ["Mozambique", "#90BC65"], ["Tanzania", "#94BD62"], ["Kenya", "#98BD5E"], ["Djibouti", "#9FBE59"], ["Somalia", "#A3BE57"], ["Seychelles", "#A7BE54"], ["Spain", "#B2BD4D"], ["France", "#BABC4A"], ["Paraguay", "#CBB742"], ["Brazil", "#D1B440"], ["Peru", "#D3B23F"], ["Ecuador", "#D6B03E"], ["Colombia", "#D9AE3E"], ["Suriname", "#DCAC3D"], ["Guyana", "#DDA83C"], ["Venezuela", "#DFA53B"], ["Panama", "#E39A39"], ["Costa Rica", "#E59738"], ["Nicaragua", "#E68E36"], ["Honduras", "#E67431"], ["Guatemala", "#E4682F"], ["Guadeloupe", "#E3622D"], ["Belize", "#E25B2C"], ["Saint Kitts and Nevis", "#E1552B"], ["Jamaica", "#E04E2A"], ["Dominican Republic", "#E04828"], ["Haiti", "#DF4227"], ["Mexico", "#DE3B26"], ["Cuba", "#DD3525"], ["USA", "#DB2823"]]}, {"key": "region", "title": "Region", "type": "categorical", "scale": [["Asia", "#447CCD"], ["Oceania", "#5EA9A1"], ["Africa", "#8ABB6A"], ["Europe", "#BEBB48"], ["South America", "#E29E39"], ["North America", "#E2562B"]]}, {"key": "genotype_nextclade", "title": "Dengue Genotype (Nextclade)", "type": "categorical", "scale": [["DENV2/AA", "#447CCD"], ["DENV2/AI", "#5EA9A1"], ["DENV2/AII", "#8ABB6A"], ["DENV2/AM", "#BEBB48"], ["DENV2/C", "#E29E39"], ["DENV2/S", "#E2562B"]]}, {"key": "serotype_genbank", "title": "Serotype (Genbank metadata)", "type": "categorical", "scale": [["denv2", "#4C90C0"]]}, {"key": "clade_membership", "title": "Dengue Genotype (Nextstrain)", "type": "categorical"}], "filters": ["country", "region", "author"], "geo_resolutions": [{"key": "country", "demes": {"Pakistan": {"latitude": 30.0, "longitude": 70.0}, "Haiti": {"latitude": 19.1399952, "longitude": -72.3570971}, "Guadeloupe": {"latitude": 16.265, "longitude": -61.551}, "Paraguay": {"latitude": -23.33333, "longitude": -58.0}, "Tonga": {"latitude": -19.9160818, "longitude": -175.2026423}, "Guatemala": {"latitude": 15.6356088, "longitude": -89.8988086}, "Papua New Guinea": {"latitude": -6.0, "longitude": 147.0}, "Indonesia": {"latitude": -5.0, "longitude": 120.0}, "Costa Rica": {"latitude": 10.0, "longitude": -84.0}, "Laos": {"latitude": 20.0171109, "longitude": 103.378253}, "Samoa": {"latitude": -13.598724, "longitude": -172.454467}, "Peru": {"latitude": -10.0, "longitude": -75.25}, "Senegal": {"latitude": 14.5, "longitude": -14.25}, "Nepal": {"latitude": 28.0, "longitude": 84.0}, "Sri Lanka": {"latitude": 7.75, "longitude": 80.75}, "South Korea": {"latitude": 35.3985008, "longitude": 127.937111}, "Australia": {"latitude": -24.7761085, "longitude": 134.755}, "Panama": {"latitude": 8.3096067, "longitude": -81.3066245}, "Cuba": {"latitude": 22.0, "longitude": -79.5}, "Cambodia": {"latitude": 13.0, "longitude": 105.0}, "Jamaica": {"latitude": 18.16667, "longitude": -77.25}, "Somalia": 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{"North America": 1.0}, "entropy": -1.000088900581841e-12}, "clade_membership": {"value": "DENV2/AA"}, "serotype_genbank": {"value": "denv2"}}, "branch_attrs": {"mutations": {"nuc": ["C55A", "A63T", "G122A", "G1278A", "T2274C", "T2685C", "T5994C", "T8451C", "C10236T", "A10587T"], "C": ["R9K"]}, "labels": {"aa": "C: R9K"}}}]}, {"name": "NODE_0002533", "node_attrs": {"div": 962, "genotype_nextclade": {"value": "DENV2/AA", "confidence": {"DENV2/AA": 0.9999999876516448}, "entropy": 2.4228280119466333e-07}, "country": {"value": "Nicaragua", "confidence": {"Nicaragua": 0.9999996427645026}, "entropy": 7.0803071278859794e-06}, "region": {"value": "North America", "confidence": {"North America": 0.9999922721522355}, "entropy": 0.00010615104596121185}, "clade_membership": {"value": "DENV2/AA"}, "serotype_genbank": {"value": "denv2"}}, "branch_attrs": {"mutations": {"nuc": ["A1242G", "T3042C", "A3423G"]}}, "children": [{"name": "NI/DB295/2018_2018", "node_attrs": {"div": 964, "genbank_accession": {"value": "OQ144226"}, "author": {"author": "Santiago,G.A.,Gonzalez-Morales,G.,Flores,B.,Charriez,K.N.,Reller,M.,Matute,A.,Reyes,Y.,Centeno-Cuadra,E.,Bucardo,F.,Munoz-Jordan,J.L.", "value": "Santiago,G.A.,Gonzalez-Morales,G.,Flores,B.,Charriez,K.N.,Reller,M.,Matute,A.,Reyes,Y.,Centeno-Cuadra,E.,Bucardo,F.,Munoz-Jordan,J.L."}, "genotype_nextclade": {"value": "DENV2/AA", "confidence": {"DENV2/AA": 1.0}, "entropy": -1.000088900581841e-12}, "country": {"value": "Nicaragua", "confidence": {"Nicaragua": 1.0}, "entropy": -1.000088900581841e-12}, "region": {"value": "North America", "confidence": {"North America": 1.0}, "entropy": -1.000088900581841e-12}, "clade_membership": {"value": "DENV2/AA"}, "serotype_genbank": {"value": "denv2"}}, "branch_attrs": {"mutations": {"nuc": ["T5010C", "G9136A"], "NS5": ["G523S"]}, "labels": {"aa": "NS5: G523S"}}}, {"name": "NI/DB311/2018_2018", "node_attrs": {"div": 963, "genbank_accession": {"value": "OQ144242"}, "author": {"author": "Santiago,G.A.,Gonzalez-Morales,G.,Flores,B.,Charriez,K.N.,Reller,M.,Matute,A.,Reyes,Y.,Centeno-Cuadra,E.,Bucardo,F.,Munoz-Jordan,J.L.", "value": "Santiago,G.A.,Gonzalez-Morales,G.,Flores,B.,Charriez,K.N.,Reller,M.,Matute,A.,Reyes,Y.,Centeno-Cuadra,E.,Bucardo,F.,Munoz-Jordan,J.L."}, "genotype_nextclade": {"value": "DENV2/AA", "confidence": {"DENV2/AA": 1.0}, "entropy": -1.000088900581841e-12}, "country": {"value": "Nicaragua", "confidence": {"Nicaragua": 1.0}, "entropy": -1.000088900581841e-12}, "region": {"value": "North America", "confidence": {"North America": 1.0}, "entropy": -1.000088900581841e-12}, "clade_membership": {"value": "DENV2/AA"}, "serotype_genbank": {"value": "denv2"}}, "branch_attrs": {"mutations": {"nuc": ["A3969G"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"nuc": "AGTTGTTAGTCTACGTGGACCGACAAAGACAGATTCTTTGAGGGAGCTAAGCTCAACGTAGTTCTAACAGTTTTTTGATTAGAGAGCAGATCTCTGATGAATAACCAACGGAAAAAGGCGAGAAATACGCCTTTCAATATGCTGAAACGCGAGAGAAACCGCGTGTCGACTGTACAACAGCTGACAAAGAGATTCTCACTTGGAATGCTGCAGGGACGAGGACCATTAAAACTGTTCATGGCCCTGGTGGCGTTCCTTCGTTTCCTAACAATCCCACCAACAGCAGGGATACTGAAAAGATGGGGAACAATCAAAAAATCAAAGGCTATCAATGTCCTGAGAGGGTTCAGGAAAGAGATTGGAAGGATGCTGAACATCTTGAACAGGAGACGCAGAACTGCAGGCATGATCATCATGCTGATTCCAACAGTGATGGCGTTCCATTTGACCACACGCAACGGAGAACCACACATGATTGTCAGTAGACAAGAGAAAGGGAAAAGCCTTCTGTTTAAAACAGAGGATGGTATGAACATGTGTACCCTCATGGCCATGGACCTTGGTGAGTTGTGTGAAGACACAATCACGTACAAGTGTCCTTTTCTCAGGCAGAACGAACCAGAAGACATAGATTGTTGGTGCAACTCCACGTCCACATGGGTAACTTATGGGACATGTACCACCACAGGAGAGCACAGAAGAGAAAAAAGATCAGTGGCACTTGTTCCACACGTGGGAATGGGACTGGAGACACGAACTGAAACATGGATGTCATCAGAAGGGGCCTGGAAACATGCCCAGAGAATTGAAACTTGGATTCTGAGACATCCAGGCTTTACCATAATGGCAGCAATCCTGGCATACACCATAGGAACGACACATTTCCAAAGAGTCCTGATTTTCATCTTACTGACAGCCGTCGCTCCTTCAATGACAATGCGCTGCATAGGAATATCAAATAGAGACTTTGTGGAAGGAGTTTCAGGAGGAAGCTGGGTTGACATAGTCTTAGAACATGGAAGCTGTGTGACGACGATGGCAAAAAACAAACCAACATTGGACTTTGAACTGATAAAAACAGAAGCCAAACAACCTGCCACTCTAAGGAAGTACTGTATAGAGGCTAAACTGACCAACACAACAACAGAATCTCGCTGCCCAACACAAGGGGAACCCAGCCTAAATGAAGAGCAGGACAAAAGGTTCGTCTGCAAACACTCCATGGTAGACAGAGGATGGGGAAATGGATGTGGATTATTTGGAAAAGGAGGCATTGTGACCTGTGCTATGTTCACATGCAAAAAGAACATGGAAGGAAAAGTTGTGCAGCCAGAAAACTTGGAATACACCATTGTGATAACACCTCACTCAGGGGAAGAACATGCAGTCGGAAATGACACAGGAAAACATGGCAAGGAAGTCAAGATAACACCACAGAGCTCCATCACAGAAGCAGAACTGACAGGCTATGGCACTGTCACGATGGAGTGCTCTCCGAGAACGGGCCTCGACTTCAATGAGATGGTGTTGCTGCAAATGGAAAACAAAGCTTGGCTGGTGCACAGACAATGGTTCCTAGACCTACCGTTACCATGGCTGCCCGGAGCAGACACACAAGGATCAAATTGGATACAGAAAGAGACATTGGTCACTTTCAAAAATCCCCATGCGAAAAAACAGGATGTTGTTGTCTTAGGATCCCAAGAGGGGGCCATGCACACAGCACTCACAGGGGCCACAGAAATCCAGATGTCATCAGGAAACTTACTGTTCACAGGACATCTCAAGTGCAGGCTGAGAATGGACAAACTACAGCTCAAAGGGATGTCATACTCTATGTGCACAGGAAAGTTTAAAGTTGTGAAGGAAATAGCAGAAACACAACATGGAACAATAGTCATCAGAGTACAATATGAAGGAGACGGCTCTCCATGCAAGATCCCTTTTGAGATAATGGATTTGGAAAAAAGACATGTCTTAGGTCGCCTGATCACAGTCAACCCAATTGTAACAGAAAAAGACAGCCCAGTCAACATAGAAGCAGAACCTCCATTCGGAGACAGCTACATCATCATAGGAGTGGAACCAGGACAATTGAAGCTCAACTGGTTTAAGAAAGGAAGTTCTATCGGCCAAATGTTTGAGACAACAATGAGAGGAGCGAAAAGAATGGCCATTTTGGGTGACACAGCCTGGGATTTTGGATCCCTGGGAGGAGTGTTCACATCTATAGGAAAGGCTCTCCACCAAGTTTTTGGAGCAATCTATGGGGCTGCCTTCAGTGGGGTCTCATGGACTATGAAGATCCTCATAGGAGTTATCATCACATGGATAGGAATGAATTCACGCAGCACCTCACTGTCTGTGTCACTAGTATTAGTGGGAATCGTGACACTATACTTGGGAGTTATGGTGCAGGCCGATAGTGGTTGCGTTGTGAGCTGGAAGAACAAAGAACTGAAATGTGGCAGTGGGATTTTCGTCACAGACAACGTGCACACATGGACAGAACAATACAAGTTCCAACCAGAATCCCCTTCAAAACTGGCTTCAGCCATCCAGAAAGCTCATGAAGAGGGCATTTGTGGAATCCGCTCAGTAACAAGACTGGAGAATCTGATGTGGAAACAGATAACACCAGAATTGAATCACATTCTATCAGAAAATGAAGTAAAGCTGACCATCATGACAGGAGACATTAAAGGAATCATGCAGGCAGGAAAACGATCTCTGCGGCCCCAACCCACTGAGCTGAGGTATTCATGGAAAACATGGGGCAAAGCGAAAATGCTCTCCACAGAGCTCCATAATCAGACCTTTCTCATTGATGGTCCCGAAACAGCAGAATGCCCCAACACAAACAGAGCTTGGAATTCACTGGAAGTTGAGGACTATGGCTTTGGAGTATTCACCACCAATATATGGCTAAAATTGAGAGAAAAGCAGGATGTATTTTGTGACTCAAAACTCATGTCAGCGGCCATAAAGGACAACAGAGCCGTCCATGCTGATATGGGTTATTGGATAGAAAGCGCACTCAATGACACATGGAAGATAGAGAAAGCCTCTTTCATTGAAGTTAAAAGCTGCCACTGGCCAAAGTCACACACCCTCTGGAGTAATGGAGTGCTAGAAAGTGAGATGATAATTCCAAAGAATTTCGCTGGACCAGTGTCACAACACAACTACAGACCAGGCTATTACACACAAACAGCAGGACCTTGGCATCTAGGCAAGCTTGAGATGGACTTTGATTTCTGCGAAGGAACTACAGTGGTGGTGACCGAGGACTGTGGAAACAGAGGACCCTCTTTAAGAACAACCACTGCCTCTGGAAAACTCATAACAGAATGGTGCTGCCGATCTTGCACATTACCACCGCTAAGATACAGAGGTGAGGATGGATGCTGGTACGGGATGGAAATCAGACCATTGAAAGAGAAAGAAGAGAATCTGGTCAACTCTTTGGTCACAGCCGGACATGGGCAGATTGACAACTTTTCACTAGGAATCTTGGGAATGGCATTGTTCCTGGAAGAAATGCTCAGGACCCGAGTAGGAACGAAACATGCAATACTACTAGTTGCAGTTTCTTTCGTGACATTGATCACAGGGAACATGTCCTTTAGAGACCTGGGAAGAGTGATGGTTATGGTGGGCGCTACCATGACGGATGACATAGGTATGGGCGTGACTTATCTTGCCCTACTAGCAGCTTTCAAAGTCAGACCAACCTTTGCAGCTGGACTGCTCTTGAGAAAACTGACCTCCAAGGAATTGATGATGACCACCATAGGAATCGTTCTCCTCTCCCAGAGTAGCATACCAGAGACCATTCTTGAACTGACTGATGCGTTAGCCTTGGGCATGATGGTCCTCAAAATAGTGAGAAACATGGAAAAATATCAGCTGGCAGTGACCATCATGGCTATCTTATGCGTCCCAAATGCTGTGATATTACAGAACGCATGGAAAGTGAGTTGCACAATATTGGCAGTGGTGTCTGTTTCCCCACTGCTCTTAACATCCTCACAACAGAAAGCGGATTGGATACCATTAGCATTGACGATCAAAGGTCTCAATCCAACAGCCATTTTTCTAACAACCCTTTCAAGAACCAGCAAGAAAAGGAGCTGGCCTCTAAATGAGGCTATCATGGCAGTTGGGATGGTGAGCATTTTAGCCAGTTCTCTCTTAAAGAATGACATTCCCATGACAGGACCATTAGTGGCTGGAGGGCTCCTCACTGTGTGCTACGTGCTCACTGGACGATCGGCCGATTTGGAACTGGAGAGAGCCGCCGATGTCAAATGGGAAGATCAGGCAGAGATATCAGGGAGCAGTCCAATTCTGTCAATAACAATATCAGAAGATGGTAGCATGTCAATAAAGAATGAAGAGGAAGAGCAAACACTGACCATACTCATTAGAACAGGATTGCTGGTGATCTCAGGACTTTTTCCGGTATCAATACCAATCACAGCAGCAGCATGGTACCTGTGGGAAGTGAAGAAACAACGGGCTGGAGTGTTGTGGGATGTCCCTTCACCCCCACCCGTGGGAAAGGCTGAACTGGAAGATGGAGCCTACAGAATCAAGCAAAAAGGGATTCTTGGATATTCCCAGATCGGAGCCGGAGTTTACAAAGAAGGAACATTCCACACAATGTGGCACGTCACACGTGGCGCTGTCCTAATGCATAAAGGGAAGAGGATTGAACCATCATGGGCGGACGTCAAGAAAGACCTAATATCATATGGAGGAGGCTGGAAGCTAGAAGGAGAATGGAAAGAAGGAGAAGAAGTCCAGGTCTTGGCATTGGAGCCTGGAAAAAATCCAAGAGCCGTCCAAACAAAACCTGGCCTTTTCAAAACCAACACCGGAACCATAGGTGCCGTATCTCTGGACTTTTCCCCTGGAACGTCAGGATCTCCAATCGTCGACAAAAAAGGAAAAGTTGTGGGTCTCTATGGCAATGGTGTCGTTACAAGGAGTGGAGCATATGTGAGTGCCATAGCCCAGACTGAAAAAAGCATTGAAGACAATCCAGAGATTGAAGATGACATCTTTCGAAAGAAAAGATTGACCATCATGGACCTCCACCCAGGAGCGGGAAAGACAAAGAGATACCTCCCAGCCATAGTCAGAGAAGCCATAAAAAGAGGCTTGAGAACACTAATCCTGGCCCCCACTAGAGTCGTGGCAGCTGAAATGGAGGAAGCCCTTAGAGGACTTCCAATAAGATACCAAACCCCAGCCATCAGGGCTGAGCACACCGGGCGGGAGATTGTGGACCTAATGTGTCATGCCACATTTACCATGAGGCTGCTATCACCAATTAGGGTGCCAAATTACAACCTGATCATCATGGACGAAGCCCATTTCACAGACCCAGCAAGCATAGCAGCTAGAGGATACATCTCAACTCGAGTAGAGATGGGTGAAGCAGCTGGAATTTTTATGACAGCCACTCCTCCGGGTAGCAGAGACCCATTTCCTCAGAGCAATGCACCAATCATGGACGAAGAAAGAGAAATTCCTGAACGTTCGTGGAATTCCGGACATGAGTGGGTCACGGATTTTAAAGGGAAGACTGTTTGGTTTGTTCCAAGCATAAAAGCCGGAAATGACATAGCAGCCTGCCTGAGAAAAAATGGAAAGAGAGTGATACAACTCAGTAGGAAGACCTTTGATTCTGAATATGTCAAGACTAGAACCAATGACTGGGACTTCGTGGTCACAACTGACATCTCGGAAATGGGTGCCAACTTCAAAGCTGAGAGGGTTATAGACCCCAGACGCTGCATGAAACCAGTTATACTGACAGATGGTGAAGAGCGGGTGATCCTGGCAGGACCCATGCCAGTGACCCACTCTAGTGCAGCACAAAGAAGAGGGAGAATAGGAAGGAATCCAAAAAATGAAAATGACCAATACATATACATGGGGGAACCTCTGGAAAATGATGAAGACTGTGCACACTGGAAGGAAGCTAAGATGCTCCTAGATAACATCAACACACCTGAAGGAATCATTCCTAGCATGTTCGAGCCAGAGCGTGAAAAGGTGGATGCCATTGACGGTGAATACCGCTTGAGAGGAGAAGCAAGGAAAACCTTTGTGGACCTAATGAGAAGAGGAGACCTACCAGTCTGGTTGGCTTACAAAGTGGCAGCTGAAGGCATCAACTACGCAGACAGAAGGTGGTGTTTTGATGGAATCAGAAACAATCAAATCTTGGAAGAAAATGTGGAAGTGGAAATCTGGACAAAAGAAGGGGAAAGGAAGAAATTAAAACCCAGATGGTTGGATGCTAGGATCTATTCTGACCCACTGGCGCTAAAAGAATTCAAGGAATTTGCAGCCGGAAGAAAGTCCCTAACCCTGAACCTAATCACAGAGATGGGTAGGCTCCCAACTTTCATGACTCAGAAGGCAAGAGATGCACTGGACAACTTAGCAGTGCTGCACACGGCTGAAGCAGGTGGAAGGGCATACAATCATGCTCTCAGTGAACTGCCGGAGACCCTGGAGACATTGCTTTTGCTGACACTTTTGGCCACAGTCACGGGAGGAATCTTTCTATTCTTGATGAGCGGAAGGGGTATAGGGAAGATGACCCTGGGAATGTGCTGCATAATCACGGCCAGCATCCTCCTATGGTACGCACAAATACAGCCACATTGGATAGCAGCTTCAATAATACTGGAGTTCTTTCTCATAGTCTTGCTCATTCCAGAACCAGAAAAGCAGAGAACACCCCAGGATAACCAATTGACCTATGTTGTCATAGCCATCCTCACAGTGGTGGCCGCAACCATGGCAAACGAGATGGGTTTCCTGGAAAAAACAAAGAAAGACCTCGGATTGGGAAGCATTGCAACCCAGCAACCCGAGAGCAACATCCTGGACATAGATCTACGTCCTGCATCAGCATGGACGCTGTATGCCGTGGCCACAACATTTATCACACCAATGTTGAGACATAGCATTGAAAATTCCTCAGTGAATGTGTCCCTAACAGCCATTGCCAACCAAGCCACAGTGCTAATGGGTCTTGGGAAAGGATGGCCATTGTCAAAGATGGACATCGGAGTTCCCCTTCTCGCCATTGGATGCTACTCACAAGTCAACCCCATAACCCTCACAGCAGCTCTTCTTTTATTGGTAGCACATTATGCCATCATAGGACCAGGACTCCAAGCAAAAGCAACCAGAGAAGCTCAGAAAAGAGCAGCAGCGGGCATCATGAAAAACCCAACTGTGGATGGAATAACAGTGATTGACCTAGATCCAATACCCTATGATCCAAAGTTTGAAAAGCAGTTGGGACAAGTAATGCTCCTAGTCCTCTGCGTGACTCAAGTGCTGATGATGAGGACTACGTGGGCTTTGTGTGAAGCCTTAACCCTAGCAACCGGGCCCATATCCACATTGTGGGAAGGAAATCCAGGGAGATTCTGGAACACAACCATTGCAGTGTCAATGGCTAACATTTTTAGAGGGAGTTACTTGGCCGGAGCTGGACTTCTCTTTTCCATCATGAAGAACACAACCAGCACAAGAAGAGGAACTGGCAACATAGGAGAGACGCTAGGAGAGAAATGGAAAAGCCGACTGAACGCATTGGGGAAAAGTGAATTCCAGATCTACAAGAAAAGTGGAATCCAGGAAGTGGACAGAACCTTAGCAAAAGAAGGCATTAAAAGAGGAGAAACGGACCATCACGCTGTGTCGCGAGGCTCAGCAAAACTGAGATGGTTCGTCGAAAGAAATATGGTCACACCAGAAGGGAAAGTAGTGGACCTTGGTTGTGGCAGAGGGGGCTGGTCATACTATTGTGGAGGACTAAAGAATGTAAGAGAAGTCAAAGGCCTAACAAAAGGAGGACCAGGACACGAAGAACCCATCCCCATGTCAACATATGGGTGGAATCTAGTGCGTCTTCAGAGTGGAGTTGACGTTTTCTTCACTCCACCAGAGAAGTGTGACACATTGTTGTGTGACATAGGGGAGTCGTCACCAAATCCCACGGTAGAAGCAGGACGAACACTCAGAGTCCTTAACCTAGTGGAAAATTGGCTGAACAACAACACCCAATTTTGCATAAAGGTTCTCAACCCATACATGCCCTCAGTCATAGAAAAAATGGAAGCACTACAAAGGAAATATGGAGGAGCCTTGGTGAGAAATCCACTCTCACGGAATTCCACACATGAGATGTACTGGGTGTCCAATGCTTCCGGGAACATAGTGTCATCAGTGAACATGATTTCAAGGATGTTGATTAACAGATTCACAATGAGACACAAGAAAGCCACTTACGAGCCAGATGTTGACCTCGGAAGCGGAACCCGCAACATTGGAATTGAAAGTGAGACACCAAACCTAGACATAATTGGAAAAAGAATAGAAAAAATAAAACAAGAGCATGAAACGTCATGGCACTATGACCAAGACCACCCATACAAAACATGGGCTTACCATGGCAGCTATGAAACAAAACAGACTGGATCAGCATCATCCATGGTGAACGGAGTGGTCAGACTGCTGACAAAACCCTGGGACGTCGTTCCCATGGTGACACAGATGGCAATGACAGACACAACTCCTTTTGGACAACAGCGCGTTTTCAAAGAGAAAGTGGACACGAGAACCCAAGAACCAAAAGAAGGCACAAAAAAACTAATGAAAATCACGGCAGAGTGGCTTTGGAAAGAACTAGGAAAGAAAAAGACACCTAGGATGTGCACCAGAGAAGAATTCACAAAAAAGGTGAGAAGCAATGCAGCCTTGGGGGCCATATTCACTGATGAGAACAAGTGGAAGTCGGCACGTGAGGCTGTTGAAGATGGTAGGTTTTGGGAGCTGGTTGACAAGGAAAGGAATCTCCATCTTGAAGGAAAGTGTGAAACATGTGTGTACAACATGATGGGAAAAAGAGAGAAGAAACTAGGAGAGTTTGGCAAAGCAAAAGGCAGCAGAGCCATATGGTACATGTGGCTTGGAGCACGCTTCTTAGAGTTTGAAGCCCTAGGATTCTTGAATGAAGACCATTGGTTCTCCAGAGAGAACTCCCTGAGTGGAGTGGAAGGAGAAGGGCTGCACAAGCTAGGTTACATCTTAAGAGACGTGAGCAAGAAAGAAGGAGGAGCAATGTATGCCGATGACACCGCAGGCTGGGACACAAGAATCACACTAGAGGACTTAAAAAATGAAGAAATGATAACAAACCACATGGAAGGAGAACACAAGAAACTTGCCGAGGCCATTTTCAAATTAACGTACCAAAACAAGGTGGTGCGTGTGCAAAGACCAACACCAAGAGGCACAGTAATGGATATCATATCGAGAAGAGACCAAAGAGGTAGTGGACAAGTTGGCACCTATGGCCTCAATACTTTCACCAATATGGAAGCACAACTAATCAGGCAGATGGAGGGGGAAGGAATCTTCAAAAGCATCCAGCACTTGACAGCCACAGAAGAAATCGCTGTGCAAGATTGGCTAGCAAGAGTGGGGCGTGAAAGGTTATCAAGAATGGCCATCAGTGGAGATGATTGTGTTGTGAAACCTCTAGATGACAGGTTTGCAAGAGCTTTAACAGCTCTAAATGACATGGGAAAGGTTAGGAAAGACATACAACAATGGGAACCCTCAAGAGGATGGAACGATTGGACACAAGTGCCCTTCTGTTCACACCATTTCCATGAGTTAATCATGAAAGATGGTCGCACACTCGTAGTTCCATGTAGAAACCAAGATGAACTGATTGGTAGAGCCCGAATTTCCCAGGGAGCTGGGTGGTCTTTGCGGGAGACGGCCTGTTTGGGGAAGTCTTACGCCCAAATGTGGAGCTTGATGTACTTCCACAGACGTGATCTCAGGCTGGCGGCAAATGCCATTTGCTCGGCAGTCCCATCACATTGGGTTCCAACAAGCCGGACAACCTGGTCCATACACGCCAGCCATGAATGGATGACGACGGAAGACATGTTGACAGTCTGGAACAGGGTGTGGATCCAAGAAAACCCATGGATGGAAGACAAAACTCCAGTGGAATCATGGGAGGAAATCCCATACCTGGGAAAAAGAGAAGACCAATGGTGCGGCTCACTGATTGGGCTAACAAGCAGGGCCACCTGGGCAAAGAACATCCAAACAGCAATAAATCAAGTCAGATCCCTCATTGGCAATGAGGAATACACAGATTACATGCCATCCATGAAAAGATTCAGAAGAGAAGAGGAAGAGGCAGGAGTCCTGTGGTAGAAGACAGAACTAACATGAAACAAGGCTAGAAGTCAGGTCGGATTAAGCCATAGTACGGAAAAAACTATGCTACCTGTGAGCCCCGTCCAAGGACGTTAAAAGAAGTCAGGCCATCACAAATGCCATAGCTTGAGCAAACTGTGCAGCCTGTAGCTCCACCTGAGAAGGTGTAAAAAATCCGGGAGGCCACAAACCATGGAAGCTGTACGCATGGCGTAGTGGACTAGCGGTTAGAGGAGACCCCTCCCTTACAAATCGCAGCAACAATGGGGGCCCAAGGTGAGATGAAGCTGTAGTCTCACTGGAAGGACTAGAGGTTAGAGGAGACCCCCCCAAAACAAAAAACAGCATATTGACGCTGGGAAAGACCAGAGATCCTGCTGTCTCCTCAGCATCATTCCAGGCACAGAACGCCAGAAAATGGAATGGTGCTGTTGAATCAACAGGTTCT", "2K": "TPQDNQLTYVVIAILTVVAATMA", "C": "MNNQRKKARNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILKRWGTIKKSKAINVLRGFRKEIGRMLNILNRRRRTAGMIIMLIPTVMA", "E": "MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKVVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKKGSSIGQMFETTMRGAKRMAILGDTAWDFGSLGGVFTSIGKALHQVFGAIYGAAFSGVSWTMKILIGVIITWIGMNSRSTSLSVSLVLVGIVTLYLGVMVQA", "M": "FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGMNMCTLMAMDLGELCEDTITYKCPFLRQNEPEDIDCWCNSTSTWVTYGTCTTTGEHRREKRSVALVPHVGMGLETRTETWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTHFQRVLIFILLTAVAPSMT", "NS1": "DSGCVVSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELRYSWKTWGKAKMLSTELHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLREKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKSCHWPKSHTLWSNGVLESEMIIPKNFAGPVSQHNYRPGYYTQTAGPWHLGKLEMDFDFCEGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA", "NS2A": "GHGQIDNFSLGILGMALFLEEMLRTRVGTKHAILLVAVSFVTLITGNMSFRDLGRVMVMVGATMTDDIGMGVTYLALLAAFKVRPTFAAGLLLRKLTSKELMMTTIGIVLLSQSSIPETILELTDALALGMMVLKIVRNMEKYQLAVTIMAILCVPNAVILQNAWKVSCTILAVVSVSPLLLTSSQQKADWIPLALTIKGLNPTAIFLTTLSRTSKKR", "NS2B": "SWPLNEAIMAVGMVSILASSLLKNDIPMTGPLVAGGLLTVCYVLTGRSADLELERAADVKWEDQAEISGSSPILSITISEDGSMSIKNEEEEQTLTILIRTGLLVISGLFPVSIPITAAAWYLWEVKKQR", "NS3": 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"entropy": 0.00012557246865136786}, "clade_membership": {"value": "DENV2/AA"}, "serotype_genbank": {"value": "denv2"}, "country": {"value": "Nicaragua", "confidence": {"Nicaragua": 0.9999996132752933}, "entropy": 7.623316396258994e-06}, "genotype_nextclade": {"value": "DENV2/AA", "confidence": {"DENV2/AA": 0.9999999806739951}, "entropy": 3.6875209704240787e-07}}, "branch_attrs": {"mutations": {"nuc": ["G7770A"]}}, "children": [{"name": "LLE1878", "node_attrs": {"div": 972, "genbank_accession": {"value": "OQ782218"}, "author": {"author": "Thongrsipong,P.,Edgerton,S.V.,Bos,S.,Saborio,S.,Kuan,G.,Balmaseda,A.,Harris,E.,Bennett,S.N.,Thongsripong,P.", "value": "Thongrsipong,P.,Edgerton,S.V.,Bos,S.,Saborio,S.,Kuan,G.,Balmaseda,A.,Harris,E.,Bennett,S.N.,Thongsripong,P."}, "region": {"value": "North America", "confidence": {"North America": 1.0}, "entropy": -1.000088900581841e-12}, "clade_membership": {"value": "DENV2/AA"}, "serotype_genbank": {"value": "denv2"}, "country": {"value": "Nicaragua", "confidence": {"Nicaragua": 1.0}, "entropy": -1.000088900581841e-12}, "genotype_nextclade": {"value": "DENV2/AA", "confidence": {"DENV2/AA": 1.0}, "entropy": -1.000088900581841e-12}}, "branch_attrs": {"mutations": {}}}, {"name": "LLE1877", "node_attrs": {"div": 972, "genbank_accession": {"value": "OQ782219"}, "author": {"author": "Thongrsipong,P.,Edgerton,S.V.,Bos,S.,Saborio,S.,Kuan,G.,Balmaseda,A.,Harris,E.,Bennett,S.N.,Thongsripong,P.", "value": "Thongrsipong,P.,Edgerton,S.V.,Bos,S.,Saborio,S.,Kuan,G.,Balmaseda,A.,Harris,E.,Bennett,S.N.,Thongsripong,P."}, "region": {"value": "North America", "confidence": {"North America": 1.0}, "entropy": -1.000088900581841e-12}, "clade_membership": {"value": "DENV2/AA"}, "serotype_genbank": {"value": "denv2"}, "country": {"value": "Nicaragua", "confidence": {"Nicaragua": 1.0}, "entropy": -1.000088900581841e-12}, "genotype_nextclade": {"value": "DENV2/AA", "confidence": {"DENV2/AA": 1.0}, "entropy": -1.000088900581841e-12}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"nuc": "AGTTGTTAGTCTACGTGGACCGACAAAGACAGATTCTTTGAGGGAGCTAAGCTCAACGTAGTTCTAACAGTTTTTTGATTAGAGAGCAGATCTCTGATGAATAACCAACGGAAAAAGGCGAGAAATACGCCTTTCAATATGCTGAAACGCGAGAGAAACCGCGTGTCGACTGTACAACAGCTGACAAAGAGATTCTCACTTGGAATGCTGCAGGGACGAGGACCATTAAAACTGTTCATGGCCCTGGTGGCGTTCCTTCGTTTCCTAACAATCCCACCAACAGCAGGGATACTGAAAAGATGGGGAACAATCAAAAAATCAAAGGCTATCAATGTCCTGAGAGGGTTCAGGAAAGAGATTGGAAGGATGCTGAACATCTTGAACAGGAGACGCAGAACTGCAGGCATGATCATCATGCTGATTCCAACAGTGATGGCGTTCCATTTGACCACACGCAACGGAGAACCACACATGATTGTCAGTAGACAAGAGAAAGGGAAAAGCCTTCTGTTTAAAACAGAGGATGGTATGAACATGTGTACCCTCATGGCCATGGACCTTGGTGAGTTGTGTGAAGACACAATCACGTACAAGTGTCCTTTTCTCAGGCAGAACGAACCAGAAGACATAGATTGTTGGTGCAACTCCACGTCCACATGGGTAACTTATGGGACATGTACCACCACAGGAGAGCACAGAAGAGAAAAAAGATCAGTGGCACTTGTTCCACACGTGGGAATGGGACTGGAGACACGAACTGAAACATGGATGTCATCAGAAGGGGCCTGGAAACATGCCCAGAGAATTGAAACTTGGATTCTGAGACATCCAGGCTTTACCATAATGGCAGCAATCCTGGCATACACCATAGGAACGACACATTTCCAAAGAGTCCTGATTTTCATCTTACTGACAGCCGTCGCTCCTTCAATGACAATGCGCTGCATAGGAATATCAAATAGAGACTTTGTGGAAGGAGTTTCAGGAGGAAGCTGGGTTGACATAGTCTTAGAACATGGAAGCTGTGTGACGACGATGGCAAAAAACAAACCAACATTGGACTTTGAACTGATAAAAACAGAAGCCAAACAACCTGCCACTCTAAGGAAGTACTGTATAGAGGCTAAACTGACCAACACAACAACAGAATCTCGCTGCCCAACACAAGGGGAACCCAGCCTAAATGAAGAGCAGGACAAAAGGTTCGTCTGCAAACACTCCATGGTAGACAGAGGATGGGGAAATGGATGTGGATTATTTGGAAAAGGAGGCATTGTGACCTGTGCTATGTTCACATGCAAAAAGAACATGGAAGGAAAAGTTGTGCAGCCAGAAAACTTGGAATACACCATTGTGATAACACCTCACTCAGGGGAAGAACATGCAGTCGGAAATGACACAGGAAAACATGGCAAGGAAGTCAAGATAACACCACAGAGCTCCATCACAGAAGCAGAACTGACAGGCTATGGCACTGTCACGATGGAGTGCTCTCCGAGAACGGGCCTCGACTTCAATGAGATGGTGTTGCTGCAAATGGAAAACAAAGCTTGGCTGGTGCACAGACAATGGTTCCTAGACCTACCGTTACCATGGCTGCCCGGAGCAGACACACAAGGATCAAATTGGATACAGAAAGAGACATTGGTCACTTTCAAAAATCCCCATGCGAAAAAACAGGATGTTGTTGTCTTAGGATCCCAAGAGGGGGCCATGCACACAGCACTCACAGGGGCCACAGAAATCCAGATGTCATCAGGAAACTTACTGTTCACAGGACATCTCAAGTGCAGGCTGAGAATGGACAAACTACAGCTCAAAGGGATGTCATACTCTATGTGCACAGGAAAGTTTAAAGTTGTGAAGGAAATAGCAGAAACACAACATGGAACAATAGTCATCAGAGTACAATATGAAGGAGACGGCTCTCCATGCAAGATCCCTTTTGAGATAATGGATTTGGAAAAAAGACATGTCTTAGGTCGCCTGATCACAGTCAACCCAATTGTAACAGAAAAAGACAGCCCAGTCAACATAGAAGCAGAACCTCCATTCGGAGACAGCTACATCATCATAGGAGTGGAACCAGGACAATTGAAGCTCAACTGGTTTAAGAAAGGAAGTTCTATCGGCCAAATGTTTGAGACAACAATGAGAGGAGCGAAAAGAATGGCCATTTTGGGTGACACAGCCTGGGATTTTGGATCCCTGGGAGGAGTGTTCACATCTATAGGAAAGGCTCTCCACCAAGTTTTTGGAGCAATCTATGGGGCTGCCTTCAGTGGGGTCTCATGGACTATGAAGATCCTCATAGGAGTTATCATCACATGGATAGGAATGAATTCACGCAGCACCTCACTGTCTGTGTCACTAGTATTAGTGGGAATCGTGACACTATACTTGGGAGTTATGGTGCAGGCCGATAGTGGTTGCGTTGTGAGCTGGAAGAACAAAGAACTGAAATGTGGCAGTGGGATTTTCGTCACAGACAACGTGCACACATGGACAGAACAATACAAGTTCCAACCAGAATCCCCTTCAAAACTGGCTTCAGCCATCCAGAAAGCTCATGAAGAGGGCATTTGTGGAATCCGCTCAGTAACAAGACTGGAGAATCTGATGTGGAAACAGATAACACCAGAATTGAATCACATTCTATCAGAAAATGAAGTAAAGCTGACCATCATGACAGGAGACATTAAAGGAATCATGCAGGCAGGAAAACGATCTCTGCGGCCCCAACCCACTGAGCTGAGGTATTCATGGAAAACATGGGGCAAAGCGAAAATGCTCTCCACAGAGCTCCATAATCAGACCTTTCTCATTGATGGTCCCGAAACAGCAGAATGCCCCAACACAAACAGAGCTTGGAATTCACTGGAAGTTGAGGACTATGGCTTTGGAGTATTCACCACCAATATATGGCTAAAATTGAGAGAAAAGCAGGATGTATTTTGTGACTCAAAACTCATGTCAGCGGCCATAAAGGACAACAGAGCCGTCCATGCTGATATGGGTTATTGGATAGAAAGCGCACTCAATGACACATGGAAGATAGAGAAAGCCTCTTTCATTGAAGTTAAAAGCTGCCACTGGCCAAAGTCACACACCCTCTGGAGTAATGGAGTGCTAGAAAGTGAGATGATAATTCCAAAGAATTTCGCTGGACCAGTGTCACAACACAACTACAGACCAGGCTATTACACACAAACAGCAGGACCTTGGCATCTAGGCAAGCTTGAGATGGACTTTGATTTCTGCGAAGGAACTACAGTGGTGGTGACCGAGGACTGTGGAAACAGAGGACCCTCTTTAAGAACAACCACTGCCTCTGGAAAACTCATAACAGAATGGTGCTGCCGATCTTGCACATTACCACCGCTAAGATACAGAGGTGAGGATGGATGCTGGTACGGGATGGAAATCAGACCATTGAAAGAGAAAGAAGAGAATCTGGTCAACTCTTTGGTCACAGCCGGACATGGGCAGATTGACAACTTTTCACTAGGAATCTTGGGAATGGCATTGTTCCTGGAAGAAATGCTCAGGACCCGAGTAGGAACGAAACATGCAATACTACTAGTTGCAGTTTCTTTCGTGACATTGATCACAGGGAACATGTCCTTTAGAGACCTGGGAAGAGTGATGGTTATGGTGGGCGCTACCATGACGGATGACATAGGTATGGGCGTGACTTATCTTGCCCTACTAGCAGCTTTCAAAGTCAGACCAACCTTTGCAGCTGGACTGCTCTTGAGAAAACTGACCTCCAAGGAATTGATGATGACCACCATAGGAATCGTTCTCCTCTCCCAGAGTAGCATACCAGAGACCATTCTTGAACTGACTGATGCGTTAGCCTTGGGCATGATGGTCCTCAAAATAGTGAGAAACATGGAAAAATATCAGCTGGCAGTGACCATCATGGCTATCTTATGCGTCCCAAATGCTGTGATATTACAGAACGCATGGAAAGTGAGTTGCACAATATTGGCAGTGGTGTCTGTTTCCCCACTGCTCTTAACATCCTCACAACAGAAAGCGGATTGGATACCATTAGCATTGACGATCAAAGGTCTCAATCCAACAGCCATTTTTCTAACAACCCTTTCAAGAACCAGCAAGAAAAGGAGCTGGCCTCTAAATGAGGCTATCATGGCAGTTGGGATGGTGAGCATTTTAGCCAGTTCTCTCTTAAAGAATGACATTCCCATGACAGGACCATTAGTGGCTGGAGGGCTCCTCACTGTGTGCTACGTGCTCACTGGACGATCGGCCGATTTGGAACTGGAGAGAGCCGCCGATGTCAAATGGGAAGATCAGGCAGAGATATCAGGGAGCAGTCCAATTCTGTCAATAACAATATCAGAAGATGGTAGCATGTCAATAAAGAATGAAGAGGAAGAGCAAACACTGACCATACTCATTAGAACAGGATTGCTGGTGATCTCAGGACTTTTTCCGGTATCAATACCAATCACAGCAGCAGCATGGTACCTGTGGGAAGTGAAGAAACAACGGGCTGGAGTGTTGTGGGATGTCCCTTCACCCCCACCCGTGGGAAAGGCTGAACTGGAAGATGGAGCCTACAGAATCAAGCAAAAAGGGATTCTTGGATATTCCCAGATCGGAGCCGGAGTTTACAAAGAAGGAACATTCCACACAATGTGGCACGTCACACGTGGCGCTGTCCTAATGCATAAAGGGAAGAGGATTGAACCATCATGGGCGGACGTCAAGAAAGACCTAATATCATATGGAGGAGGCTGGAAGCTAGAAGGAGAATGGAAAGAAGGAGAAGAAGTCCAGGTCTTGGCATTGGAGCCTGGAAAAAATCCAAGAGCCGTCCAAACAAAACCTGGCCTTTTCAAAACCAACACCGGAACCATAGGTGCCGTATCTCTGGACTTTTCCCCTGGAACGTCAGGATCTCCAATCGTCGACAAAAAAGGAAAAGTTGTGGGTCTCTATGGCAATGGTGTCGTTACAAGGAGTGGAGCATATGTGAGTGCCATAGCCCAGACTGAAAAAAGCATTGAAGACAATCCAGAGATTGAAGATGACATCTTTCGAAAGAAAAGATTGACCATCATGGACCTCCACCCAGGAGCGGGAAAGACAAAGAGATACCTCCCAGCCATAGTCAGAGAAGCCATAAAAAGAGGCTTGAGAACACTAATCCTGGCCCCCACTAGAGTCGTGGCAGCTGAAATGGAGGAAGCCCTTAGAGGACTTCCAATAAGATACCAAACCCCAGCCATCAGGGCTGAGCACACCGGGCGGGAGATTGTGGACCTAATGTGTCATGCCACATTTACCATGAGGCTGCTATCACCAATTAGGGTGCCAAATTACAACCTGATCATCATGGACGAAGCCCATTTCACAGACCCAGCAAGCATAGCAGCTAGAGGATACATCTCAACTCGAGTAGAGATGGGTGAAGCAGCTGGAATTTTTATGACAGCCACTCCTCCGGGTAGCAGAGACCCATTTCCTCAGAGCAATGCACCAATCATGGACGAAGAAAGAGAAATTCCTGAACGTTCGTGGAATTCCGGACATGAGTGGGTCACGGATTTTAAAGGGAAGACTGTTTGGTTTGTTCCAAGCATAAAAGCCGGAAATGACATAGCAGCCTGCCTGAGAAAAAATGGAAAGAGAGTGATACAACTCAGTAGGAAGACCTTTGATTCTGAATATGTCAAGACTAGAACCAATGACTGGGACTTCGTGGTCACAACTGACATCTCGGAAATGGGTGCCAACTTCAAAGCTGAGAGGGTTATAGACCCCAGACGCTGCATGAAACCAGTTATACTGACAGATGGTGAAGAGCGGGTGATCCTGGCAGGACCCATGCCAGTGACCCACTCTAGTGCAGCACAAAGAAGAGGGAGAATAGGAAGGAATCCAAAAAATGAAAATGACCAATACATATACATGGGGGAACCTCTGGAAAATGATGAAGACTGTGCACACTGGAAGGAAGCTAAGATGCTCCTAGATAACATCAACACACCTGAAGGAATCATTCCTAGCATGTTCGAGCCAGAGCGTGAAAAGGTGGATGCCATTGACGGTGAATACCGCTTGAGAGGAGAAGCAAGGAAAACCTTTGTGGACCTAATGAGAAGAGGAGACCTACCAGTCTGGTTGGCTTACAAAGTGGCAGCTGAAGGCATCAACTACGCAGACAGAAGGTGGTGTTTTGATGGAATCAGAAACAATCAAATCTTGGAAGAAAATGTGGAAGTGGAAATCTGGACAAAAGAAGGGGAAAGGAAGAAATTAAAACCCAGATGGTTGGATGCTAGGATCTATTCTGACCCACTGGCGCTAAAAGAATTCAAGGAATTTGCAGCCGGAAGAAAGTCCCTAACCCTGAACCTAATCACAGAGATGGGTAGGCTCCCAACTTTCATGACTCAGAAGGCAAGAGATGCACTGGACAACTTAGCAGTGCTGCACACGGCTGAAGCAGGTGGAAGGGCATACAATCATGCTCTCAGTGAACTGCCGGAGACCCTGGAGACATTGCTTTTGCTGACACTTTTGGCCACAGTCACGGGAGGAATCTTTCTATTCTTGATGAGCGGAAGGGGTATAGGGAAGATGACCCTGGGAATGTGCTGCATAATCACGGCCAGCATCCTCCTATGGTACGCACAAATACAGCCACATTGGATAGCAGCTTCAATAATACTGGAGTTCTTTCTCATAGTCTTGCTCATTCCAGAACCAGAAAAGCAGAGAACACCCCAGGATAACCAATTGACCTATGTTGTCATAGCCATCCTCACAGTGGTGGCCGCAACCATGGCAAACGAGATGGGTTTCCTGGAAAAAACAAAGAAAGACCTCGGATTGGGAAGCATTGCAACCCAGCAACCCGAGAGCAACATCCTGGACATAGATCTACGTCCTGCATCAGCATGGACGCTGTATGCCGTGGCCACAACATTTATCACACCAATGTTGAGACATAGCATTGAAAATTCCTCAGTGAATGTGTCCCTAACAGCCATTGCCAACCAAGCCACAGTGCTAATGGGTCTTGGGAAAGGATGGCCATTGTCAAAGATGGACATCGGAGTTCCCCTTCTCGCCATTGGATGCTACTCACAAGTCAACCCCATAACCCTCACAGCAGCTCTTCTTTTATTGGTAGCACATTATGCCATCATAGGACCAGGACTCCAAGCAAAAGCAACCAGAGAAGCTCAGAAAAGAGCAGCAGCGGGCATCATGAAAAACCCAACTGTGGATGGAATAACAGTGATTGACCTAGATCCAATACCCTATGATCCAAAGTTTGAAAAGCAGTTGGGACAAGTAATGCTCCTAGTCCTCTGCGTGACTCAAGTGCTGATGATGAGGACTACGTGGGCTTTGTGTGAAGCCTTAACCCTAGCAACCGGGCCCATATCCACATTGTGGGAAGGAAATCCAGGGAGATTCTGGAACACAACCATTGCAGTGTCAATGGCTAACATTTTTAGAGGGAGTTACTTGGCCGGAGCTGGACTTCTCTTTTCCATCATGAAGAACACAACCAGCACAAGAAGAGGAACTGGCAACATAGGAGAGACGCTAGGAGAGAAATGGAAAAGCCGACTGAACGCATTGGGGAAAAGTGAATTCCAGATCTACAAGAAAAGTGGAATCCAGGAAGTGGACAGAACCTTAGCAAAAGAAGGCATTAAAAGAGGAGAAACGGACCATCACGCTGTGTCGCGAGGCTCAGCAAAACTGAGATGGTTCGTCGAAAGAAATATGGTCACACCAGAAGGGAAAGTAGTGGACCTTGGTTGTGGCAGAGGGGGCTGGTCATACTATTGTGGAGGACTAAAGAATGTAAGAGAAGTCAAAGGCCTAACAAAAGGAGGACCAGGACACGAAGAACCCATCCCCATGTCAACATATGGGTGGAATCTAGTGCGTCTTCAGAGTGGAGTTGACGTTTTCTTCACTCCACCAGAGAAGTGTGACACATTGTTGTGTGACATAGGGGAGTCGTCACCAAATCCCACGGTAGAAGCAGGACGAACACTCAGAGTCCTTAACCTAGTGGAAAATTGGCTGAACAACAACACCCAATTTTGCATAAAGGTTCTCAACCCATACATGCCCTCAGTCATAGAAAAAATGGAAGCACTACAAAGGAAATATGGAGGAGCCTTGGTGAGAAATCCACTCTCACGGAATTCCACACATGAGATGTACTGGGTGTCCAATGCTTCCGGGAACATAGTGTCATCAGTGAACATGATTTCAAGGATGTTGATTAACAGATTCACAATGAGACACAAGAAAGCCACTTACGAGCCAGATGTTGACCTCGGAAGCGGAACCCGCAACATTGGAATTGAAAGTGAGACACCAAACCTAGACATAATTGGAAAAAGAATAGAAAAAATAAAACAAGAGCATGAAACGTCATGGCACTATGACCAAGACCACCCATACAAAACATGGGCTTACCATGGCAGCTATGAAACAAAACAGACTGGATCAGCATCATCCATGGTGAACGGAGTGGTCAGACTGCTGACAAAACCCTGGGACGTCGTTCCCATGGTGACACAGATGGCAATGACAGACACAACTCCTTTTGGACAACAGCGCGTTTTCAAAGAGAAAGTGGACACGAGAACCCAAGAACCAAAAGAAGGCACAAAAAAACTAATGAAAATCACGGCAGAGTGGCTTTGGAAAGAACTAGGAAAGAAAAAGACACCTAGGATGTGCACCAGAGAAGAATTCACAAAAAAGGTGAGAAGCAATGCAGCCTTGGGGGCCATATTCACTGATGAGAACAAGTGGAAGTCGGCACGTGAGGCTGTTGAAGATGGTAGGTTTTGGGAGCTGGTTGACAAGGAAAGGAATCTCCATCTTGAAGGAAAGTGTGAAACATGTGTGTACAACATGATGGGAAAAAGAGAGAAGAAACTAGGAGAGTTTGGCAAAGCAAAAGGCAGCAGAGCCATATGGTACATGTGGCTTGGAGCACGCTTCTTAGAGTTTGAAGCCCTAGGATTCTTGAATGAAGACCATTGGTTCTCCAGAGAGAACTCCCTGAGTGGAGTGGAAGGAGAAGGGCTGCACAAGCTAGGTTACATCTTAAGAGACGTGAGCAAGAAAGAAGGAGGAGCAATGTATGCCGATGACACCGCAGGCTGGGACACAAGAATCACACTAGAGGACTTAAAAAATGAAGAAATGATAACAAACCACATGGAAGGAGAACACAAGAAACTTGCCGAGGCCATTTTCAAATTAACGTACCAAAACAAGGTGGTGCGTGTGCAAAGACCAACACCAAGAGGCACAGTAATGGATATCATATCGAGAAGAGACCAAAGAGGTAGTGGACAAGTTGGCACCTATGGCCTCAATACTTTCACCAATATGGAAGCACAACTAATCAGGCAGATGGAGGGGGAAGGAATCTTCAAAAGCATCCAGCACTTGACAGCCACAGAAGAAATCGCTGTGCAAGATTGGCTAGCAAGAGTGGGGCGTGAAAGGTTATCAAGAATGGCCATCAGTGGAGATGATTGTGTTGTGAAACCTCTAGATGACAGGTTTGCAAGAGCTTTAACAGCTCTAAATGACATGGGAAAGGTTAGGAAAGACATACAACAATGGGAACCCTCAAGAGGATGGAACGATTGGACACAAGTGCCCTTCTGTTCACACCATTTCCATGAGTTAATCATGAAAGATGGTCGCACACTCGTAGTTCCATGTAGAAACCAAGATGAACTGATTGGTAGAGCCCGAATTTCCCAGGGAGCTGGGTGGTCTTTGCGGGAGACGGCCTGTTTGGGGAAGTCTTACGCCCAAATGTGGAGCTTGATGTACTTCCACAGACGTGATCTCAGGCTGGCGGCAAATGCCATTTGCTCGGCAGTCCCATCACATTGGGTTCCAACAAGCCGGACAACCTGGTCCATACACGCCAGCCATGAATGGATGACGACGGAAGACATGTTGACAGTCTGGAACAGGGTGTGGATCCAAGAAAACCCATGGATGGAAGACAAAACTCCAGTGGAATCATGGGAGGAAATCCCATACCTGGGAAAAAGAGAAGACCAATGGTGCGGCTCACTGATTGGGCTAACAAGCAGGGCCACCTGGGCAAAGAACATCCAAACAGCAATAAATCAAGTCAGATCCCTCATTGGCAATGAGGAATACACAGATTACATGCCATCCATGAAAAGATTCAGAAGAGAAGAGGAAGAGGCAGGAGTCCTGTGGTAGAAGACAGAACTAACATGAAACAAGGCTAGAAGTCAGGTCGGATTAAGCCATAGTACGGAAAAAACTATGCTACCTGTGAGCCCCGTCCAAGGACGTTAAAAGAAGTCAGGCCATCACAAATGCCATAGCTTGAGCAAACTGTGCAGCCTGTAGCTCCACCTGAGAAGGTGTAAAAAATCCGGGAGGCCACAAACCATGGAAGCTGTACGCATGGCGTAGTGGACTAGCGGTTAGAGGAGACCCCTCCCTTACAAATCGCAGCAACAATGGGGGCCCAAGGTGAGATGAAGCTGTAGTCTCACTGGAAGGACTAGAGGTTAGAGGAGACCCCCCCAAAACAAAAAACAGCATATTGACGCTGGGAAAGACCAGAGATCCTGCTGTCTCCTCAGCATCATTCCAGGCACAGAACGCCAGAAAATGGAATGGTGCTGTTGAATCAACAGGTTCT", "2K": "TPQDNQLTYVVIAILTVVAATMA", "C": "MNNQRKKARNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILKRWGTIKKSKAINVLRGFRKEIGRMLNILNRRRRTAGMIIMLIPTVMA", "E": "MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKVVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKKGSSIGQMFETTMRGAKRMAILGDTAWDFGSLGGVFTSIGKALHQVFGAIYGAAFSGVSWTMKILIGVIITWIGMNSRSTSLSVSLVLVGIVTLYLGVMVQA", "M": "FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGMNMCTLMAMDLGELCEDTITYKCPFLRQNEPEDIDCWCNSTSTWVTYGTCTTTGEHRREKRSVALVPHVGMGLETRTETWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTHFQRVLIFILLTAVAPSMT", "NS1": "DSGCVVSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELRYSWKTWGKAKMLSTELHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLREKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKSCHWPKSHTLWSNGVLESEMIIPKNFAGPVSQHNYRPGYYTQTAGPWHLGKLEMDFDFCEGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA", "NS2A": "GHGQIDNFSLGILGMALFLEEMLRTRVGTKHAILLVAVSFVTLITGNMSFRDLGRVMVMVGATMTDDIGMGVTYLALLAAFKVRPTFAAGLLLRKLTSKELMMTTIGIVLLSQSSIPETILELTDALALGMMVLKIVRNMEKYQLAVTIMAILCVPNAVILQNAWKVSCTILAVVSVSPLLLTSSQQKADWIPLALTIKGLNPTAIFLTTLSRTSKKR", "NS2B": "SWPLNEAIMAVGMVSILASSLLKNDIPMTGPLVAGGLLTVCYVLTGRSADLELERAADVKWEDQAEISGSSPILSITISEDGSMSIKNEEEEQTLTILIRTGLLVISGLFPVSIPITAAAWYLWEVKKQR", "NS3": "AGVLWDVPSPPPVGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPEIEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKRVIQLSRKTFDSEYVKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLPVWLAYKVAAEGINYADRRWCFDGIRNNQILEENVEVEIWTKEGERKKLKPRWLDARIYSDPLALKEFKEFAAGRK", "NS4A": "SLTLNLITEMGRLPTFMTQKARDALDNLAVLHTAEAGGRAYNHALSELPETLETLLLLTLLATVTGGIFLFLMSGRGIGKMTLGMCCIITASILLWYAQIQPHWIAASIILEFFLIVLLIPEPEKQR", "NS4B": "NEMGFLEKTKKDLGLGSIATQQPESNILDIDLRPASAWTLYAVATTFITPMLRHSIENSSVNVSLTAIANQATVLMGLGKGWPLSKMDIGVPLLAIGCYSQVNPITLTAALLLLVAHYAIIGPGLQAKATREAQKRAAAGIMKNPTVDGITVIDLDPIPYDPKFEKQLGQVMLLVLCVTQVLMMRTTWALCEALTLATGPISTLWEGNPGRFWNTTIAVSMANIFRGSYLAGAGLLFSIMKNTTSTRR", "NS5": "GTGNIGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNMVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFTPPEKCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLNNNTQFCIKVLNPYMPSVIEKMEALQRKYGGALVRNPLSRNSTHEMYWVSNASGNIVSSVNMISRMLINRFTMRHKKATYEPDVDLGSGTRNIGIESETPNLDIIGKRIEKIKQEHETSWHYDQDHPYKTWAYHGSYETKQTGSASSMVNGVVRLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTQEPKEGTKKLMKITAEWLWKELGKKKTPRMCTREEFTKKVRSNAALGAIFTDENKWKSAREAVEDGRFWELVDKERNLHLEGKCETCVYNMMGKREKKLGEFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWFSRENSLSGVEGEGLHKLGYILRDVSKKEGGAMYADDTAGWDTRITLEDLKNEEMITNHMEGEHKKLAEAIFKLTYQNKVVRVQRPTPRGTVMDIISRRDQRGSGQVGTYGLNTFTNMEAQLIRQMEGEGIFKSIQHLTATEEIAVQDWLARVGRERLSRMAISGDDCVVKPLDDRFARALTALNDMGKVRKDIQQWEPSRGWNDWTQVPFCSHHFHELIMKDGRTLVVPCRNQDELIGRARISQGAGWSLRETACLGKSYAQMWSLMYFHRRDLRLAANAICSAVPSHWVPTSRTTWSIHASHEWMTTEDMLTVWNRVWIQENPWMEDKTPVESWEEIPYLGKREDQWCGSLIGLTSRATWAKNIQTAINQVRSLIGNEEYTDYMPSMKRFRREEEEAGVLW", "pr": "FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGMNMCTLMAMDLGELCEDTITYKCPFLRQNEPEDIDCWCNSTSTWVTYGTCTTTGEHRREKR"}} \ No newline at end of file