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Possibility to get the GFF file #87

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Rohit-Satyam opened this issue Dec 11, 2024 · 0 comments
Open

Possibility to get the GFF file #87

Rohit-Satyam opened this issue Dec 11, 2024 · 0 comments
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enhancement New feature or request

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@Rohit-Satyam
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This is not an urgent feature request but rather a query to determine whether such a feature is possible.

I have lately faced issues in making GFF files using Dengue viruses' FASTA file (I have used Prodigal, Prokka, and VADR, but all these tools give me one big poly-protein rather than splitting it into NS1, E, C, NS2, etc.), and I am having a hard time automating this. I see that you guys somehow calculate per-gene coverage when sequences are submitted so do you run internal annotation of every sequence? If so, is making the GFF file available for every FASTA sequence uploaded possible?

@Rohit-Satyam Rohit-Satyam added the enhancement New feature or request label Dec 11, 2024
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