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Fix H3 vaccine strains #174

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joverlee521 opened this issue Dec 18, 2024 · 0 comments
Open
6 tasks

Fix H3 vaccine strains #174

joverlee521 opened this issue Dec 18, 2024 · 0 comments

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@joverlee521
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joverlee521 commented Dec 18, 2024 •
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Details on Slack.

TODOs

General improvements:

  • Standardize capitalization of location in strain names (e.g. DistrictofColumnbia -> DistrictOfColumbia)
  • Add resolve method that allows selection of specific sequence accessions

Data clean up:

  • remove A/Croatia/10136/RV/2023 sequences since they are duplicates of A/Croatia/10136RV/2023
  • remove A/DistrictofColumbia/27/2023 sequences and reupload so they have A/DistrictOfColumbia/27/2023 strain names
  • rename all test and reference virus names in titers for A/Croatia/10136RV/2023 and A/DistrictOfColumbia/27/2023

Post clean up:

  • update seasonal-flu to use accessions to specify sequences of duplicate strain names
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