diff --git a/config/hmpxv1/colors.tsv b/config/hmpxv1/colors.tsv deleted file mode 100644 index 0f9c214f..00000000 --- a/config/hmpxv1/colors.tsv +++ /dev/null @@ -1,40 +0,0 @@ -region Africa #8ABB6A -region Asia #447CCD -region Europe #BEBB48 -region North America #E2562B -region Oceania #5EA9A1 -region South America #E29E39 - -recency Older #447CCD -recency One month ago #5EA9A1 -recency One week ago #8ABB6A -recency 3-7 days ago #BEBB48 -recency 1-2 days ago #E29E39 -recency New #E2562B - -country Nigeria #5E1D9D -country South Africa #4C25B0 -country Israel #4236C0 -country Singapore #3F4ACA -country Taiwan #3F5ED0 -country Australia #4272CE -country Portugal #4783C8 -country Ireland #4D93BE -country Spain #559EB1 -country United Kingdom #5EA9A2 -country France #69B091 -country Belgium #75B581 -country Netherlands #82BA72 -country Switzerland #90BC65 -country Germany #9FBE59 -country Italy #AEBD50 -country Slovenia #BCBB49 -country Sweden #CAB843 -country Austria #D5B03F -country Czech Republic #DEA73B -country Slovakia #E49938 -country Finland #E68735 -country Brazil #E67331 -country Mexico #E25A2C -country USA #DF4127 -country Canada #DB2823 diff --git a/config/hmpxv1/config.yaml b/config/hmpxv1/config.yaml index 11bcaa11..ea1e5f6f 100644 --- a/config/hmpxv1/config.yaml +++ b/config/hmpxv1/config.yaml @@ -1,7 +1,6 @@ reference: "config/reference.fasta" genemap: "config/genemap.gff" genbank_reference: "config/reference.gb" -colors: "config/hmpxv1/colors.tsv" include: "config/hmpxv1/include.txt" clades: "config/clades.tsv" lat_longs: "config/lat_longs.tsv" diff --git a/config/hmpxv1_big/config.yaml b/config/hmpxv1_big/config.yaml index 79d4878f..166329d2 100644 --- a/config/hmpxv1_big/config.yaml +++ b/config/hmpxv1_big/config.yaml @@ -1,7 +1,6 @@ reference: "config/reference.fasta" genemap: "config/genemap.gff" genbank_reference: "config/reference.gb" -colors: "config/hmpxv1/colors.tsv" include: "config/hmpxv1_big/include.txt" clades: "config/clades.tsv" lat_longs: "config/lat_longs.tsv" diff --git a/config/mpxv/colors.tsv b/config/mpxv/colors.tsv deleted file mode 100644 index c5d6a249..00000000 --- a/config/mpxv/colors.tsv +++ /dev/null @@ -1,37 +0,0 @@ -region Africa #8ABB6A -region Asia #447CCD -region Europe #BEBB48 -region North America #E2562B -region Oceania #5EA9A1 -region South America #E29E39 - -recency Older #447CCD -recency One month ago #5EA9A1 -recency One week ago #8ABB6A -recency 3-7 days ago #BEBB48 -recency 1-2 days ago #E29E39 -recency New #E2562B - -country Sierra Leone #5E1D9D -country Liberia #4A27B2 -country Côte d'Ivoire #403AC4 -country Nigeria #3F52CD -country Gabon #4169CF -country Cameroon #457ECB -country Republic of the Congo #4C90C0 -country Central African Republic #559EB1 -country Democratic Republic of the Congo #5FA9A0 -country Israel #6BB18E -country Singapore #79B77C -country Portugal #89BB6B -country Spain #99BD5D -country United Kingdom #AABD52 -country France #BBBC49 -country Belgium #CBB842 -country Netherlands #D7AF3E -country Germany #E0A23A -country Slovenia #E69237 -country Finland #E67B32 -country Brazil #E3612D -country USA #DF4528 -country Canada #DB2823 diff --git a/config/mpxv/config.yaml b/config/mpxv/config.yaml index 134cea6c..2f0983c9 100644 --- a/config/mpxv/config.yaml +++ b/config/mpxv/config.yaml @@ -1,6 +1,5 @@ auspice_config: "config/mpxv/auspice_config.json" include: "config/mpxv/include.txt" -colors: "config/mpxv/colors.tsv" reference: "config/reference.fasta" genemap: "config/genemap.gff" genbank_reference: "config/reference.gb"