diff --git a/phylogenetic/Snakefile b/phylogenetic/Snakefile index d5c3e2d..19cce10 100644 --- a/phylogenetic/Snakefile +++ b/phylogenetic/Snakefile @@ -16,14 +16,12 @@ if not config: build_dir = "results" - - auspice_dir = "auspice" prefix = config.get("auspice_prefix", None) AUSPICE_PREFIX = ("trial_" + prefix + "_") if prefix is not None else "" -AUSPICE_FILENAME = AUSPICE_PREFIX + config.get("auspice_name") - +# Defaults to the `build_name` if no `auspice_name` is provided in the config +AUSPICE_FILENAME = AUSPICE_PREFIX + config.get("auspice_name", config["build_name"]) rule all: input: