diff --git a/ingest/README.md b/ingest/README.md index ec571d0d..a94ff53b 100644 --- a/ingest/README.md +++ b/ingest/README.md @@ -2,6 +2,10 @@ This is the ingest pipeline for mpox virus sequences. +## Software requirements + +Follow the [standard installation instructions](https://docs.nextstrain.org/en/latest/install.html) for Nextstrain's suite of software tools. + ## Usage > NOTE: All command examples assume you are within the `ingest` directory. @@ -83,8 +87,7 @@ These are optional environment variables used in our automated pipeline for prov ### GenBank data -GenBank sequences and metadata are fetched via NCBI Virus. -The exact URL used to fetch data is constructed by `vendored/ncbi-virus-url`. +GenBank sequences and metadata are fetched via [NCBI datasets](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/download-and-install/). ## `ingest/vendored`