From 3238875b4e1b2f7747de0ab264d33d5f5e8c7a39 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Thu, 8 Aug 2024 05:08:27 +0000 Subject: [PATCH] chore: release 2024-08-08--05-08-21Z Updated datasets: - Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216) --- .../flu/h3n2/ha/EPI1857216/CHANGELOG.md | 2 +- data_output/index.json | 6 ++++-- .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 11268257 -> 11268319 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 ++- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 10 files changed, 8 insertions(+), 5 deletions(-) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/CHANGELOG.md (98%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/README.md (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/dataset.zip (99%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/pathogen.json (98%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/reference.fasta (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/sequences.fasta (100%) rename data_output/nextstrain/flu/h3n2/ha/EPI1857216/{unreleased => 2024-08-08--05-08-21Z}/tree.json (100%) diff --git a/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md b/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md index 0572a0d2..68b2fa3c 100644 --- a/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md +++ b/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-08-08T05:08:21Z Fix numbering of RBD sites it the `pathogen.json`. The relevant positions were indexed 1-based, when they should have been indexed 0-based. diff --git a/data_output/index.json b/data_output/index.json index c62e2dfb..a088c5c5 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -1124,7 +1124,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-08-08T05:08:21Z", + "tag": "2024-08-08--05-08-21Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -1164,7 +1165,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-08-08T05:08:21Z", + "tag": "2024-08-08--05-08-21Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/CHANGELOG.md index 0572a0d2..68b2fa3c 100644 --- a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-08-08T05:08:21Z Fix numbering of RBD sites it the `pathogen.json`. The relevant positions were indexed 1-based, when they should have been indexed 0-based. diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/README.md b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/README.md similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/README.md rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/README.md diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/dataset.zip b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/dataset.zip similarity index 99% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/dataset.zip rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/dataset.zip index b0afafc2bfa7780b485d17a76dbdc73654c2f93f..569797b63a9d1bb682c5b79eccb87ee146dd5150 100644 GIT binary patch delta 971 zcmZwG*-leY6vpw>7OE6Viy{u7Ev+&L#lw+8J>XEW7A?}MIH9POR&W5pw$2I)g7d5g zhl*$&kBKo}nD_|ZXyOA9y*KS6_-~wI;>!MICo6mHb@h#ZeUmu>cfhC1$QOQAu~4D? zJYJ#~gtQ!*jZN+rucz7Xt?CZh?N&*YY8;}A(<(Y;(IrdOZEx#dn+>Y`?So_z1j+R7 zyLl|v6YC8Hqv4P{YLl(D|4rE{4OYq)4R-$f#NiN~=@tAu7`KeXEgEQ{Lk2RT$0STf z77WNn4vff!31;MB3Z^0-(@=ovn1Pv?g+dfzHs&C`+lpe?V8>j{LkUVzhH}hD1uEe{ z6&655H6$!V4V8GC|yGubN26V!Z delta 896 zcmYMzNla655XbTN%3e$RP-GFbk5jY2D;fXe1BC@Q#sOVy`> zB8UtAO^os2$(t8X#Dhm;yn3*`nO+*djRq(AWRl4wbD7`wA8#WjkYDQz3y+unR+?l` z8bxZPB!w6lmR8!U9pzOuj?8wq)vDHabb8u6t}c)Jo&AlX|1@o=3mPRUXng-$88;?$ zyIL$Z)zUM&Wy#R1s`pD=@<6~m7%ZeDhB|CVJ$7Ixc40Rfum^jw5BqTd zjc}m}&2YnmgJ{7awBj(1pbhQlz)>8-ade^!-RMCtPT(X?;WWea|FKoJ? aSu694LOECK_lqLALHp<@Tt9yami_=A*OJ)) diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/genome_annotation.gff3 b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/pathogen.json similarity index 98% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/pathogen.json index 6a442760..b86d596b 100644 --- a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/pathogen.json +++ b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/pathogen.json @@ -165,7 +165,8 @@ "reference name": "A/Darwin/6/2021" }, "version": { - "tag": "unreleased", + "updatedAt": "2024-08-08T05:08:21Z", + "tag": "2024-08-08--05-08-21Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/reference.fasta b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/reference.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/reference.fasta rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/reference.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/sequences.fasta b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/sequences.fasta rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/sequences.fasta diff --git a/data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/tree.json b/data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/tree.json similarity index 100% rename from data_output/nextstrain/flu/h3n2/ha/EPI1857216/unreleased/tree.json rename to data_output/nextstrain/flu/h3n2/ha/EPI1857216/2024-08-08--05-08-21Z/tree.json