diff --git a/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md b/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md index e7737ca3..01c6bdcc 100644 --- a/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md +++ b/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-12-04T17:05:31Z Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences. diff --git a/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md b/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md index 23ad371f..5acc88c1 100644 --- a/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md +++ b/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-12-04T17:05:31Z Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences. diff --git a/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md b/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md index e99deb6b..cc0cd989 100644 --- a/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md +++ b/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md @@ -1,3 +1,3 @@ -## Unreleased +## 2024-12-04T17:05:31Z -Initial release of the dataset. \ No newline at end of file +Initial release of the dataset. diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/CHANGELOG.md b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/CHANGELOG.md similarity index 95% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/CHANGELOG.md rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/CHANGELOG.md index e7737ca3..01c6bdcc 100644 --- a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/CHANGELOG.md +++ b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-12-04T17:05:31Z Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences. diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/README.md b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/README.md similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/README.md rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/README.md diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/dataset.zip b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/dataset.zip similarity index 99% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/dataset.zip rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/dataset.zip index ec6049e8..846c57e8 100644 Binary files a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/dataset.zip and b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/dataset.zip differ diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/example_sequences.fasta b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/example_sequences.fasta similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/example_sequences.fasta rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/example_sequences.fasta diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/genome_annotation.gff3 b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/genome_annotation.gff3 similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/genome_annotation.gff3 rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/genome_annotation.gff3 diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/pathogen.json b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/pathogen.json similarity index 97% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/pathogen.json rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/pathogen.json index 78fe3dce..766f5052 100644 --- a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/pathogen.json +++ b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/pathogen.json @@ -125,7 +125,8 @@ ], "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/reference.fasta b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/reference.fasta similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/reference.fasta rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/reference.fasta diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/tree.json b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/tree.json similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/tree.json rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/tree.json diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/CHANGELOG.md b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/CHANGELOG.md similarity index 94% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/CHANGELOG.md rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/CHANGELOG.md index 23ad371f..5acc88c1 100644 --- a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/CHANGELOG.md +++ b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-12-04T17:05:31Z Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences. diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/README.md b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/README.md similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/README.md rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/README.md diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/dataset.zip b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/dataset.zip similarity index 99% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/dataset.zip rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/dataset.zip index 6ae0dd5f..bab31b92 100644 Binary files a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/dataset.zip and b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/dataset.zip differ diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/example_sequences.fasta b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/example_sequences.fasta similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/example_sequences.fasta rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/example_sequences.fasta diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/genome_annotation.gff3 b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/genome_annotation.gff3 similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/genome_annotation.gff3 rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/genome_annotation.gff3 diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/pathogen.json b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/pathogen.json similarity index 97% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/pathogen.json rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/pathogen.json index 6d81073e..58f0bb68 100644 --- a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/pathogen.json +++ b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/pathogen.json @@ -125,7 +125,8 @@ ], "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/reference.fasta b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/reference.fasta similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/reference.fasta rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/reference.fasta diff --git a/data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/tree.json b/data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/tree.json similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/all-clades/unreleased/tree.json rename to data_output/community/moncla-lab/iav-h5/ha/all-clades/2024-12-04--17-05-31Z/tree.json diff --git a/data_output/index.json b/data_output/index.json index 740e1ce1..3f9082e4 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -3264,7 +3264,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -3272,7 +3273,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -3434,7 +3436,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -3458,7 +3461,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -3498,7 +3502,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -3514,7 +3519,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/CHANGELOG.md b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/CHANGELOG.md new file mode 100644 index 00000000..cc0cd989 --- /dev/null +++ b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/CHANGELOG.md @@ -0,0 +1,3 @@ +## 2024-12-04T17:05:31Z + +Initial release of the dataset. diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/README.md b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/README.md similarity index 100% rename from data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/README.md rename to data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/README.md diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/dataset.zip b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/dataset.zip similarity index 99% rename from data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/dataset.zip rename to data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/dataset.zip index 5775c601..d888ebb1 100644 Binary files a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/dataset.zip and b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/dataset.zip differ diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/genome_annotation.gff3 b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/pathogen.json b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/pathogen.json similarity index 96% rename from data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/pathogen.json rename to data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/pathogen.json index 0ec58f0e..1609c822 100644 --- a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/pathogen.json +++ b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/pathogen.json @@ -93,7 +93,8 @@ "L" ], "version": { - "tag": "unreleased", + "updatedAt": "2024-12-04T17:05:31Z", + "tag": "2024-12-04--17-05-31Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/reference.fasta b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/reference.fasta similarity index 100% rename from data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/reference.fasta rename to data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/reference.fasta diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/sequences.fasta b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/sequences.fasta rename to data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/sequences.fasta diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/tree.json b/data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/tree.json similarity index 100% rename from data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/tree.json rename to data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/tree.json diff --git a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/CHANGELOG.md b/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/CHANGELOG.md deleted file mode 100644 index e99deb6b..00000000 --- a/data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/CHANGELOG.md +++ /dev/null @@ -1,3 +0,0 @@ -## Unreleased - -Initial release of the dataset. \ No newline at end of file