From 474218d9bbc67dbbd7ffaaddad5735351bb932b5 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Wed, 4 Dec 2024 17:05:38 +0000 Subject: [PATCH] chore: release 2024-12-04--17-05-31Z Updated datasets: - Human Metapneumovirus (nextstrain/hmpv/all-clades/NC_039199) - H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4) - H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades) --- .../moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md | 2 +- .../iav-h5/ha/all-clades/CHANGELOG.md | 2 +- .../hmpv/all-clades/NC_039199/CHANGELOG.md | 4 ++-- .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 32247312 -> 32247374 bytes .../example_sequences.fasta | 0 .../genome_annotation.gff3 | 0 .../pathogen.json | 3 ++- .../reference.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 11425569 -> 11425631 bytes .../example_sequences.fasta | 0 .../genome_annotation.gff3 | 0 .../pathogen.json | 3 ++- .../reference.fasta | 0 .../tree.json | 0 data_output/index.json | 18 ++++++++++++------ .../2024-12-04--17-05-31Z/CHANGELOG.md | 3 +++ .../README.md | 0 .../dataset.zip | Bin 5111166 -> 5111229 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 ++- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../NC_039199/unreleased/CHANGELOG.md | 3 --- 29 files changed, 27 insertions(+), 18 deletions(-) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/CHANGELOG.md (95%) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/README.md (100%) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/dataset.zip (99%) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/example_sequences.fasta (100%) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/genome_annotation.gff3 (100%) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/pathogen.json (97%) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/reference.fasta (100%) rename data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/{unreleased => 2024-12-04--17-05-31Z}/tree.json (100%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/CHANGELOG.md (94%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/README.md (100%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/dataset.zip (99%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/example_sequences.fasta (100%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/genome_annotation.gff3 (100%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/pathogen.json (97%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/reference.fasta (100%) rename data_output/community/moncla-lab/iav-h5/ha/all-clades/{unreleased => 2024-12-04--17-05-31Z}/tree.json (100%) create mode 100644 data_output/nextstrain/hmpv/all-clades/NC_039199/2024-12-04--17-05-31Z/CHANGELOG.md rename data_output/nextstrain/hmpv/all-clades/NC_039199/{unreleased => 2024-12-04--17-05-31Z}/README.md (100%) rename data_output/nextstrain/hmpv/all-clades/NC_039199/{unreleased => 2024-12-04--17-05-31Z}/dataset.zip (99%) rename data_output/nextstrain/hmpv/all-clades/NC_039199/{unreleased => 2024-12-04--17-05-31Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/hmpv/all-clades/NC_039199/{unreleased => 2024-12-04--17-05-31Z}/pathogen.json (96%) rename data_output/nextstrain/hmpv/all-clades/NC_039199/{unreleased => 2024-12-04--17-05-31Z}/reference.fasta (100%) rename data_output/nextstrain/hmpv/all-clades/NC_039199/{unreleased => 2024-12-04--17-05-31Z}/sequences.fasta (100%) rename data_output/nextstrain/hmpv/all-clades/NC_039199/{unreleased => 2024-12-04--17-05-31Z}/tree.json (100%) delete mode 100644 data_output/nextstrain/hmpv/all-clades/NC_039199/unreleased/CHANGELOG.md diff --git a/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md b/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md index e7737ca3..01c6bdcc 100644 --- a/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md +++ b/data/community/moncla-lab/iav-h5/ha/2.3.4.4/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-12-04T17:05:31Z Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences. diff --git a/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md b/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md index 23ad371f..5acc88c1 100644 --- a/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md +++ b/data/community/moncla-lab/iav-h5/ha/all-clades/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-12-04T17:05:31Z Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences. diff --git a/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md b/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md index e99deb6b..cc0cd989 100644 --- a/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md +++ b/data/nextstrain/hmpv/all-clades/NC_039199/CHANGELOG.md @@ -1,3 +1,3 @@ -## Unreleased +## 2024-12-04T17:05:31Z -Initial release of the dataset. \ No newline at end of file +Initial release of the dataset. diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/CHANGELOG.md b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/CHANGELOG.md similarity index 95% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/CHANGELOG.md rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/CHANGELOG.md index e7737ca3..01c6bdcc 100644 --- a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/CHANGELOG.md +++ b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-12-04T17:05:31Z Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences. diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/README.md b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/README.md similarity index 100% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/README.md rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/README.md diff --git a/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/dataset.zip b/data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/dataset.zip similarity index 99% rename from data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/unreleased/dataset.zip rename to data_output/community/moncla-lab/iav-h5/ha/2.3.4.4/2024-12-04--17-05-31Z/dataset.zip index ec6049e80b59ca6efa6fbbe12f507d27b6bd66b0..846c57e8175872a3b809da6bf770327c9036406b 100644 GIT binary patch delta 2487 zcmZwJbx@UA9Eb6HQBVX_Y!C%6CVG`dF;Ni}1G@v|iXtE)U@LZu4dxZW?(Xiw?gCra zb<^!#_xaB5II}bR&U~KV%$f6^|K4}bycIi&JYW72hJT(42D^(TO{HxN261Gu zN%N34VWF+shSiLV^7QoZ_4f5Q`}mr@{X6;u1$zes`}uU=8RV5=pPAM7Q@Vq}kiI)6 z!`2}*IUy=C$r2TkWD52${ohNb8ihP~Oi7W^|J`CX`vjT21I!#eDK%?aYL*c;$cOx} zg&hi@AnZ{H4se7M3Zn>$!WqR-93@Z^rBE7W-~v~ag&WGDJlx@d3NXPF6;TP5Q3X{| 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