From c5e460bfd2cf598fb3575a7c2fb8581efe4a1637 Mon Sep 17 00:00:00 2001 From: Isabel Joia Date: Tue, 26 Nov 2024 11:52:29 +0100 Subject: [PATCH] hmpv: updated README.md --- .../hmpv/all-clades/NC_039199/README.md | 23 +++++++++++-------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/data/nextstrain/hmpv/all-clades/NC_039199/README.md b/data/nextstrain/hmpv/all-clades/NC_039199/README.md index e13bbea2..356de858 100644 --- a/data/nextstrain/hmpv/all-clades/NC_039199/README.md +++ b/data/nextstrain/hmpv/all-clades/NC_039199/README.md @@ -1,10 +1,13 @@ -# Human Metapneumovirus - -This is the [Nextclade](https://clades.nextstrain.org/) build and dataset for human metapneumovirus. - -Metadata and sequences used in this repository are available via . - -The building encompasses praparing data for analysis, doing quality control, performing analyses, saving the results in a format suitable for visualization (with[ auspice](https://github.com/nextstrain/auspice)) and creating example sequence data. This involves running components of Nextstrain such as [augur](https://github.com/nextstrain/augur) and [nextclade](https://github.com/nextstrain/nextclade). The Nextclade dataset comprises the Nextclade build, a reference sequence, the dataset configurations, genome annotations as well as example sequence data. - -The Nextclade dataset can be used to identify differences between example sequence data and the reference sequence, assign sequences to clades and report potential sequence quality issues. - +# Human Metapneumovirus - All Clades with Reference Genome NC_039199 + +| Key | Value | +| ---------------------- | --------------------------------------------------------------------------------------------------------------------| +| authors | [Richard Neher](https://neherlab.org), Isabel Joia, [Nextstrain](https://nextstrain.org) | +| data source | Genbank | +| workflow | [github.com/nextstrain/human-metapneumovirus](https://github.com/nextstrain/human-metapneumovirus) | +| nextclade dataset path | nextstrain/hmpv/all-clades/NC_039199 | +| reference | NC_039199 | +| clade definitions | [github.com/nextstrain/human-metapneumovirus/nextclade/clades.tsv](https://github.com/nextstrain/human-metapneumovirus/blob/main/nextclade/resources/clades.tsv) | + +## Scope of this dataset +This dataset for human metapneumovirus uses reference sequence [NC_039199](https://www.ncbi.nlm.nih.gov/nuccore/NC_039199.1/) which is available at NCBI. NC_039199 belongs to clade A1. The reference tree covers the diversity of human metapneumovirus since the first sequenced samples.