From 6dbe6c17a74d1178772a6dee9bab515b0bc948a1 Mon Sep 17 00:00:00 2001
From: Jover Lee <joverlee521@gmail.com>
Date: Tue, 17 Dec 2024 10:18:51 -0800
Subject: [PATCH] annotate_metadata_with_gihsn: mark output as `temp()`

Follow up to <https://github.com/nextstrain/seasonal-flu/pull/198#discussion_r1888998308>
---
 workflow/snakemake_rules/select_strains.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/snakemake_rules/select_strains.smk b/workflow/snakemake_rules/select_strains.smk
index 6ef89e7..322ae4a 100644
--- a/workflow/snakemake_rules/select_strains.smk
+++ b/workflow/snakemake_rules/select_strains.smk
@@ -77,7 +77,7 @@ rule annotate_metadata_with_gihsn:
     input:
         metadata="data/{lineage}/metadata_joined.tsv",
     output:
-        metadata="data/{lineage}/metadata_with_gihsn.tsv",
+        metadata=temp("data/{lineage}/metadata_with_gihsn.tsv"),
     conda: "../envs/nextstrain.yaml"
     benchmark:
         "benchmarks/annotate_metadata_with_gihsn_{lineage}.txt"