diff --git a/profiles/nextclade/run-nextclade.smk b/profiles/nextclade/run-nextclade.smk index e1a4445e..4adfdebb 100644 --- a/profiles/nextclade/run-nextclade.smk +++ b/profiles/nextclade/run-nextclade.smk @@ -13,7 +13,7 @@ rule get_nextclade_dataset_for_lineage_and_segment: shell: """ nextclade3 dataset get \ - -n flu_{wildcards.lineage}_{wildcards.segment} \ + -n 'nextstrain/flu/{wildcards.lineage}/{wildcards.segment}' \ --output-dir {output.nextclade_dir} """