From c2527cfbeba16fe614ea5e3d11319e6c7667af9a Mon Sep 17 00:00:00 2001 From: John Huddleston Date: Tue, 10 Dec 2024 15:06:21 -0800 Subject: [PATCH] Update H3N2 and Vic titer references --- config/references_for_titer_plots/h3n2/cell_fra.txt | 3 ++- config/references_for_titer_plots/h3n2/cell_hi.txt | 3 ++- config/references_for_titer_plots/h3n2/egg_fra.txt | 1 + config/references_for_titer_plots/h3n2/egg_hi.txt | 1 + config/references_for_titer_plots/vic/cell_hi.txt | 8 +++----- config/references_for_titer_plots/vic/egg_hi.txt | 5 ++--- 6 files changed, 11 insertions(+), 10 deletions(-) diff --git a/config/references_for_titer_plots/h3n2/cell_fra.txt b/config/references_for_titer_plots/h3n2/cell_fra.txt index c720c29d..5311b4ee 100644 --- a/config/references_for_titer_plots/h3n2/cell_fra.txt +++ b/config/references_for_titer_plots/h3n2/cell_fra.txt @@ -5,10 +5,11 @@ A/Canberra/327/2023 # J.1.1:9N,275D A/Sydney/878/2023 # J.2 A/Nevada/32/2023 # J.2 A/Croatia/10136/RV/2023 # J.2:145N, vaccine strain +A/Croatia/10136RV/2023 # J.2:145N, vaccine strain A/Victoria/2997/2023 # J.2:145N A/Victoria/488/2024 # J.2:158K,207R,227S A/Canberra/302/2023 # J.2:140R -A/Colorado/6/2024 # J.2:79L,239S +A/Colorado/6/2024 # J.2.1 A/Oklahoma/5/2024 # J.2:158K A/DistrictOfColumbia/27/2023 # J.2:145N A/Victoria/979/2024 # J.2:65K,124N,145N,262N diff --git a/config/references_for_titer_plots/h3n2/cell_hi.txt b/config/references_for_titer_plots/h3n2/cell_hi.txt index 1734a590..9fed2a40 100644 --- a/config/references_for_titer_plots/h3n2/cell_hi.txt +++ b/config/references_for_titer_plots/h3n2/cell_hi.txt @@ -5,9 +5,10 @@ A/Colorado/6/2024 # J.2.1 A/Sydney/878/2023 # J.2 A/Canberra/302/2023 # J.2:140R A/Victoria/2997/2023 # J.2:145N -A/Victoria/488/2024 # J.2:158K,207R,227S A/DistrictOfColumbia/27/2023 # J.2:145N A/Croatia/10136/RV/2023 # J.2:145N, vaccine strain +A/Croatia/10136RV/2023 # J.2:145N, vaccine strain +A/Victoria/488/2024 # J.2:158K,207R,227S A/Canberra/327/2023 # J.1.1:9N,275D A/Netherlands/10563/2023 # J.2.2:51V A/Perth/722/2024 # J.2.2:145N diff --git a/config/references_for_titer_plots/h3n2/egg_fra.txt b/config/references_for_titer_plots/h3n2/egg_fra.txt index 81588cc4..2ea55ecc 100644 --- a/config/references_for_titer_plots/h3n2/egg_fra.txt +++ b/config/references_for_titer_plots/h3n2/egg_fra.txt @@ -1,6 +1,7 @@ A/Thailand/8/2022-egg # J, vaccine strain A/Wisconsin/90/2023-egg # J.2, HI A/Croatia/10136/RV/2023-egg # J.2:145N, vaccine strain +A/Croatia/10136RV/2023-egg # J.2:145N, vaccine strain A/Canberra/302/2023-egg # J.2:140R,195Y A/Victoria/2997/2023-egg # J.2:145N,246K HI A/Lisbon/216/2023-egg # J.2:124N, HI diff --git a/config/references_for_titer_plots/h3n2/egg_hi.txt b/config/references_for_titer_plots/h3n2/egg_hi.txt index 714f860b..66ae87a6 100644 --- a/config/references_for_titer_plots/h3n2/egg_hi.txt +++ b/config/references_for_titer_plots/h3n2/egg_hi.txt @@ -3,6 +3,7 @@ A/Canberra/331/2023-egg # J.1.1:9N,138S,225G,275D A/Victoria/2997/2023-egg # J.2:145N,246K A/Canberra/309/2023-egg # J.2:140R,186N A/Croatia/10136/RV/2023-egg # J.2:145N, vaccine strain +A/Croatia/10136RV/2023-egg # J.2:145N, vaccine strain A/Switzerland/8649/2023-egg # J.2:94K A/Lisbon/216/2023-egg # J.2.2:228T A/Canberra/373/2023-egg # J.2.2:145R,207R,228T diff --git a/config/references_for_titer_plots/vic/cell_hi.txt b/config/references_for_titer_plots/vic/cell_hi.txt index 1c6003a1..6b7c3271 100644 --- a/config/references_for_titer_plots/vic/cell_hi.txt +++ b/config/references_for_titer_plots/vic/cell_hi.txt @@ -1,9 +1,7 @@ B/Austria/1359417/2021 # C, vaccine strain +B/Utah/11/2023 # C.5.1 +B/Alabama/7/2023 # C.5.6 +B/Kanagawa/IC2360/2024 # C.5.6 B/Lao/F4529/2023 # C.5.7 B/Ranong/373/2023 # C.5.7 B/Tokyo/23150/2023 # C.5.7 -B/Alabama/7/2023 # C.5.6 -B/Kanagawa/IC2360/2024 # C.5.6 -B/Utah/11/2023 # C.5.1 -B/Massachusetts/1/2021 # C.5 -B/Nepal/21FL2507/2021 # C.5 diff --git a/config/references_for_titer_plots/vic/egg_hi.txt b/config/references_for_titer_plots/vic/egg_hi.txt index 91724619..103c76b6 100644 --- a/config/references_for_titer_plots/vic/egg_hi.txt +++ b/config/references_for_titer_plots/vic/egg_hi.txt @@ -1,5 +1,4 @@ B/Austria/1359417/2021-egg # C, vaccine strain -B/Tokyo/23150/2023-egg # C.5.7 -B/Kanagawa/IC2360/2024-egg # C.5.6 B/Catalonia/2279261NS/2023-egg # C.5.1:128E -B/Connecticut/1/2021-egg # C.5 +B/Kanagawa/IC2360/2024-egg # C.5.6 +B/Tokyo/23150/2023-egg # C.5.7