diff --git a/ingest/Snakefile b/ingest/Snakefile index 56848c4..453a327 100644 --- a/ingest/Snakefile +++ b/ingest/Snakefile @@ -55,20 +55,20 @@ rule all: _get_all_targets, -include: "workflow/snakemake_rules/fetch_sequences.smk" -include: "workflow/snakemake_rules/transform.smk" +include: "rules/fetch_sequences.smk" +include: "rules/transform.smk" if config.get("upload", False): - include: "workflow/snakemake_rules/upload.smk" + include: "rules/upload.smk" if send_slack_notifications: - include: "workflow/snakemake_rules/slack_notifications.smk" + include: "rules/slack_notifications.smk" if config.get("trigger_rebuild", False): - include: "workflow/snakemake_rules/trigger_rebuild.smk" + include: "rules/trigger_rebuild.smk" diff --git a/ingest/workflow/snakemake_rules/fetch_sequences.smk b/ingest/rules/fetch_sequences.smk similarity index 100% rename from ingest/workflow/snakemake_rules/fetch_sequences.smk rename to ingest/rules/fetch_sequences.smk diff --git a/ingest/workflow/snakemake_rules/slack_notifications.smk b/ingest/rules/slack_notifications.smk similarity index 100% rename from ingest/workflow/snakemake_rules/slack_notifications.smk rename to ingest/rules/slack_notifications.smk diff --git a/ingest/workflow/snakemake_rules/transform.smk b/ingest/rules/transform.smk similarity index 100% rename from ingest/workflow/snakemake_rules/transform.smk rename to ingest/rules/transform.smk diff --git a/ingest/workflow/snakemake_rules/trigger_rebuild.smk b/ingest/rules/trigger_rebuild.smk similarity index 100% rename from ingest/workflow/snakemake_rules/trigger_rebuild.smk rename to ingest/rules/trigger_rebuild.smk diff --git a/ingest/workflow/snakemake_rules/upload.smk b/ingest/rules/upload.smk similarity index 100% rename from ingest/workflow/snakemake_rules/upload.smk rename to ingest/rules/upload.smk