ceci_nic5.config

/*
 * CÉCI NIC5 CLUSTER
 * =================
 * This configuration file provides sensible defaults to run Nextflow pipelines
 * on the CÉCI NIC5 cluster.
 *
 * For more information on the CÉCI NIC5 cluster, refer to this page of the
 * wiki:
 *     https://www.ceci-hpc.be/clusters.html#nic5
 */
params {
    config_profile_name        = 'CÉCI'
    config_profile_description = 'CÉCI NIC5 cluster profiles provided by the GIGA Bioinformatics Team.'
    config_profile_contact     = 'Martin Grignard (@MartinGrignard)'
    config_profile_url         = 'https://www.ceci-hpc.be/clusters.html#nic5'
}

/*
 * Resources limitations
 * ---------------------
 * These resources limitations are maximum values across all nodes of all
 * queues. At least one node matches these maximum resources in all of the
 * available queues.
 *
 * For more information on the available nodes, use the `sinfo` command.
 */
params {
    max_cpus   = 64
    max_memory = 1.TB
    max_time   = 2.days
}

/*
 * Singularity configuration
 * -------------------------
 * Singularity is used to run containerised tools.
 */
singularity {
    autoMounts  = true
    cacheDir    = "${HOME}/.cache/singularity"
    enabled     = true
    pullTimeout = 3.hours
}

/*
 * Slurm configuration
 * -------------------
 * Slurm is used as a workload manager. This configuration makes sure to share
 * the available resources in a fairly.
 *
 * For more information on how to use Slurm on the CÉCI clusters, refer to this
 * page of the wiki:
 *     https://support.ceci-hpc.be/doc/_contents/QuickStart/SubmittingJobs/SlurmTutorial.html
 */
executor {
    name         = 'slurm'
    queueSize    = 200
    pollInterval = 10.s
}

/*
 * Process configuration
 * ---------------------
 * Several queues are available on the cluster, based on the required memory.
 * This configuration makes sure to request resources on the most
 * relevant queue.
 *
 * For more information on the available queues, refer to this page of the
 * wiki:
 *     https://www.ceci-hpc.be/clusters.html#nic5
 */
process {
    queue          = {
        task.memory <= 256.GB ? 'batch' : 'hmem'
    }
    resourceLimits = [
        cpus  : 64,
        memory: 1.TB,
        time  : 2.days,
    ]
    stageInMode    = 'symlink'
    stageOutMode   = 'rsync'
}