Update ucl_myriad.md #712
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Add troubleshooting
mashehu
approved these changes
Jun 28, 2024
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| 1. If your job gets terminated by SIGHUP, you should then submit your nextflow script within a job: | ||
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| `qsub -l h_rt=48:00:00 -l mem_free=40G -pe smp 1 -b y nextflow run` |
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| `qsub -l h_rt=48:00:00 -l mem_free=40G -pe smp 1 -b y nextflow run` | |
| ```bash | |
| qsub -l h_rt=48:00:00 -l mem_free=40G -pe smp 1 -b y nextflow run | |
| ``` |
gives you a nice copy-code button
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| 2. If a job fails due to apptainer requiring too much cpu/memory, from the `mksquashfs` process. | ||
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| Then make a sge qsub script to pull the container using apptainer, then point to the location of the resultant SIF files. |
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Suggested change
| Then make a sge qsub script to pull the container using apptainer, then point to the location of the resultant SIF files. | |
| Make a sge qsub script to pull the container using apptainer, then point to the location of the resultant SIF files. |
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Thanks Matthias |
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Add troubleshooting issues
And warning about singularity
updating an existing text
name: ucl_myriad
Please follow these steps before submitting your PR:
[WIP]in its titlemasterbranch