Update docs/usage.md

Pipeline remote changed to nf-core

Co-Authored-By: James A. Fellows Yates <[email protected]>

docs/usage.md

@@ -15,7 +15,7 @@ NXF_OPTS='-Xms1g -Xmx4g'
 The typical command for running the pipeline is as follows:
 
 ```bash
-nextflow run maxibor/coproid --genome1 'GRCh37' --genome2 'CanFam3.1' --name1 'Homo_sapiens' --name2 'Canis_familiaris' --reads '*_R{1,2}.fastq.gz' --krakendb 'path/to/minikraken_db' -profile docker
+nextflow run nf-core/coproid --genome1 'GRCh37' --genome2 'CanFam3.1' --name1 'Homo_sapiens' --name2 'Canis_familiaris' --reads '*_R{1,2}.fastq.gz' --krakendb 'path/to/minikraken_db' -profile docker
 ```
 
 This will launch the pipeline with the `docker` configuration profile. See below for more information about profiles.