diff --git a/tests/.nftignore b/tests/.nftignore index b267b09f..21b57c58 100644 --- a/tests/.nftignore +++ b/tests/.nftignore @@ -11,3 +11,7 @@ report/*.html report/*.zip *html shinyngs_app/**/data.rds +report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.html +report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv +report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.html +report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.tsv diff --git a/tests/test_affy.nf.test b/tests/test_affy.nf.test index 1fd24c9e..9e8ac746 100644 --- a/tests/test_affy.nf.test +++ b/tests/test_affy.nf.test @@ -16,7 +16,12 @@ nextflow_pipeline { then { // stable_name: All files + folders in ${params.outdir}/ with a stable name - def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'report/gsea/phenotype_uninvolved_lesional/**/*.png']) + def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', + 'report/gsea/phenotype_uninvolved_lesional/**/*.png', + 'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.html', + 'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv', + 'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.html', + 'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.tsv']) // stable_path: All files in ${params.outdir}/ with stable content def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore') assertAll( diff --git a/tests/test_affy.nf.test.snap b/tests/test_affy.nf.test.snap index 7d7281f3..bfe2c0fc 100644 --- a/tests/test_affy.nf.test.snap +++ b/tests/test_affy.nf.test.snap @@ -61,8 +61,6 @@ "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_FATTY_ACID_METABOLISM.tsv", "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.html", "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.tsv", - "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.html", - "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv", "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.html", "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.tsv", "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL6_JAK_STAT3_SIGNALING.html", @@ -167,7 +165,6 @@ "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_ESTROGEN_RESPONSE_EARLY.tsv:md5,695b5bd61210e9fd4e76993cee00c63d", "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_FATTY_ACID_METABOLISM.tsv:md5,cb069d05610994d1e43ea84de165bcd0", "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.tsv:md5,09eba22af78006f69a9d0cb1bee27331", - "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv:md5,08c50f431cee394c0280f41345a07d96", "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.tsv:md5,38824ee08434a02049cf7f57c43545d5", "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL6_JAK_STAT3_SIGNALING.tsv:md5,ab80e349a52b1b17d350d488d552f2b6", "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_INFLAMMATORY_RESPONSE.tsv:md5,99983d81cd0ee6bc9c5e078ea311147c", @@ -213,6 +210,6 @@ "nf-test": "0.9.0", "nextflow": "24.10.0" }, - "timestamp": "2024-11-08T14:04:25.71001709" + "timestamp": "2024-11-08T15:05:24.153458864" } } \ No newline at end of file