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65 Open 103 Closed
65 Open 103 Closed
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Issues list

Automatic build of gene set database
#388 opened Dec 11, 2024 by suzannejin
1
Add nf-core module propd to differential subworkflow
#387 opened Dec 10, 2024 by suzannejin
How to define complex contrasts? enhancement New feature or request
#386 opened Dec 10, 2024 by grst
Multi-tool functionality and subworkflows as hub of methods
#385 opened Dec 10, 2024 by suzannejin
1 of 16 tasks
10
Create a subworkflow for functional analysis methods enhancement New feature or request
#384 opened Dec 10, 2024 by suzannejin
3 tasks
Integrate subworkflows into pipeline enhancement New feature or request
#383 opened Dec 10, 2024 by suzannejin
3 tasks
Create nf-tests for local module filter_difftable.nf enhancement New feature or request
#379 opened Dec 6, 2024 by nschcolnicov
@nschcolnicov
2
Create nf-tests for local module tabular_to_gsea_chip.nf enhancement New feature or request
#378 opened Dec 6, 2024 by nschcolnicov
@nschcolnicov
Contrast specification enhancement New feature or request
#377 opened Dec 6, 2024 by grst
differentialabundance: check that module and pipeline level tests exist and meet the community standards
#372 opened Dec 3, 2024 by nschcolnicov
@nschcolnicov
1
Model validation enhancement New feature or request
#371 opened Dec 3, 2024 by grst
6 tasks
@alanmmobbs93
YAML-based contrast definition enhancement New feature or request
#370 opened Dec 3, 2024 by grst
@nschcolnicov
4
Consider splitting quarto reports into QC and results enhancement New feature or request
#369 opened Dec 3, 2024 by grst
Create nf-core module for immunedeconv and add to pipeline
#368 opened Dec 3, 2024 by grst
@nschcolnicov
Meta issue functional analyses enhancement New feature or request
#367 opened Dec 3, 2024 by grst
3
Shinylive for ShinyNGS app enhancement New feature or request
#366 opened Dec 3, 2024 by grst
Support SummarizedExperiment as input enhancement New feature or request
#365 opened Dec 3, 2024 by grst
8
Incorrect tab names in differential report bug Something isn't working
#364 opened Dec 3, 2024 by grst
@atrigila @alanmmobbs93 @nschcolnicov
Support for linear mixed effects models enhancement New feature or request
#363 opened Dec 2, 2024 by grst
More flexible model and contrast definition enhancement New feature or request
#362 opened Dec 2, 2024 by grst
@nschcolnicov
9
Create subworkflow for deconvolution analyses in bulk data enhancement New feature or request
#361 opened Nov 19, 2024 by apeltzer
1 task
Unable to run pipeline – please provide test data bug Something isn't working
#358 opened Nov 15, 2024 by febedtu
1
Replace unmaintained Proteus with maxLFQ, by author's suggestion. enhancement New feature or request
#356 opened Nov 15, 2024 by vmkalbskopf
Importing Data into Chart Studio Cloud bug Something isn't working
#353 opened Nov 14, 2024 by Faitero
Add nf-core module DoRothEA to nf-core/differentialabundance enhancement New feature or request
#352 opened Nov 13, 2024 by atrigila
1
ProTip! no:milestone will show everything without a milestone.