nf-core CI

Merge pull request #1099 from nf-core/fix_publishdir #2826

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Job	Run time
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool fastp --preproces...	5m 22s
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool adapterremoval --...	4m 57s
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bwamem --run_mapdamage_...	16m 46s
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bowtie2 --damagecalcula...	5m 45s
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool circularmapper --skip_p...	5m 53s
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_mtnucratio --run_contam...	12m 9s
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_sexdeterrmine --run_gen...	11m 15s
Run pipeline with test data (23.04.0, -profile test_multiref,docker)	12m 31s
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool fastp -...	4m 59s
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool adapter...	4m 41s
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bwamem --run_...	16m 13s
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bowtie2 --dam...	6m 1s
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool circularmappe...	5m 15s
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_mtnucratio --...	9m 34s
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_sexdeterrmine...	11m 9s
Run pipeline with test data (latest-everything, -profile test_multiref,docker)	12m 6s
	2h 24m 36s