diff --git a/bin/collect_genotypes.py b/bin/collect_genotypes.py index 6746f499a..34a35c416 100755 --- a/bin/collect_genotypes.py +++ b/bin/collect_genotypes.py @@ -50,7 +50,7 @@ def validate_eigenstrat(genof, snpf, indf): VERSION = "1.0.0" -parser = argparse.ArgumentParser(usage="%(prog)s (-i ) (-c | -R | -E) [-L | -S Ind [-S Ind2]] [-o ]" , description="A tool to check two different EingenStrat databses for shared individuals, and extract or remove individuals from an EigenStrat database.") +parser = argparse.ArgumentParser(usage="%(prog)s [-v] (-g1 ) (-s1 ) (-i1 ) (-g2 ) (-s2 ) (-i2 ) (-o )" , description="A tool to put together two EIGENSTRAT datasets of genotyped on the same SNP set into a single dataset.") parser._optionals.title = "Available options" parser.add_argument("-g1", "--genoFn1", type = str, metavar = "", required = True, help = "The path to the input geno file of the first dataset.") parser.add_argument("-s1", "--snpFn1", type = str, metavar = "", required = True, help = "The path to the input snp file of the first dataset.")