diff --git a/conf/modules.config b/conf/modules.config index 3f1fec1..6ee473f 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -74,7 +74,7 @@ process { ext.args = [ genome_reference != 'grch37' & genome_reference != 'grch38' ? "--genome_reference '${genome_reference}'" : '', genome_reference == 'grch37' ? "--genome_reference 'https://grch37.ensembl.org/'" : '', - genome_reference == 'grch38' ? "--genome_reference 'https://ensembl.org/'" : '', + genome_reference == 'grch38' ? "--genome_reference 'https://www.ensembl.org'" : '', '--peptides' ].join(' ').trim() publishDir = [ @@ -88,7 +88,7 @@ process { ext.args = [ genome_reference != 'grch37' & genome_reference != 'grch38' ? "--genome_reference '${genome_reference}'" : '', genome_reference == 'grch37' ? "--genome_reference 'https://grch37.ensembl.org/'" : '', - genome_reference == 'grch38' ? "--genome_reference 'https://ensembl.org/'" : '', + genome_reference == 'grch38' ? "--genome_reference 'https://www.ensembl.org'" : '', '--peptides' ].join(' ').trim() publishDir = [ @@ -102,7 +102,7 @@ process { ext.args = [ genome_reference != 'grch37' & genome_reference != 'grch38' ? "--genome_reference '${genome_reference}'" : '', genome_reference == 'grch37' ? "--genome_reference 'https://grch37.ensembl.org/'" : '', - genome_reference == 'grch38' ? "--genome_reference 'https://ensembl.org/'" : '', + genome_reference == 'grch38' ? "--genome_reference 'https://www.ensembl.org'" : '', '--somatic_mutation' ].join(' ').trim() publishDir = [