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CI: add gpu tag test job #478

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@sateeshperi sateeshperi requested a review from a team as a code owner December 2, 2024 05:58
@sateeshperi
CI: add gpu tag test job
e03286f
@sateeshperi
CI: add gpu tag test job
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@sateeshperi
CI: add gpu tag test job
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@sateeshperi
CI: add gpu tag test job
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@sateeshperi
CI: add gpu tag test job
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CI: add gpu tag test job
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CI: add gpu tag test job
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CI: add gpu tag test job
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CI: add gpu tag test job
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CI: add gpu tag test job
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@sateeshperi
CI: add gpu tag test job
d571e3c
@sateeshperi
add bwameth_gpu test
231cbc3
@sateeshperi
add gpu profile to config
0b2f069
@sateeshperi
add bwameth gpu test + snap
b26a4aa
@sateeshperi
update bwameth default test formatting
24e35a6
@sateeshperi
update bwameth use_gpu test with index name
9b43b3e
@sateeshperi
minor formatting fix
5ebc7e2
@sateeshperi
add fq2bammeth config + test + snap, ci: nf-test job filter by tag cpu
210199e
@sateeshperi
ci: nf-test job filter by tag cpu
c4d81d4
@sateeshperi
add cpu/gpu tags to tests
67c8708
@sateeshperi
touch cpu and gpu test for debug
d6917c3
@sateeshperi
add bwameth run_qualimap test
754065d
@sateeshperi
add setup python step
4ff6c9e
maxulysse
maxulysse reviewed Dec 3, 2024
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maxulysse
maxulysse reviewed Dec 3, 2024
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.github/workflows/ci.yml Outdated Show resolved Hide resolved
@sateeshperi @mashehu
Update .github/workflows/linting.yml
c1b68ab 
Co-authored-by: Matthias Hörtenhuber <[email protected]>
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Reviewers

@GallVp GallVp GallVp left review comments

@mashehu mashehu mashehu left review comments

@maxulysse maxulysse maxulysse approved these changes

@FelixKrueger FelixKrueger Awaiting requested review from FelixKrueger FelixKrueger is a code owner automatically assigned from nf-core/methylseq

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@sateeshperi sateeshperi

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Successfully merging this pull request may close these issues.

Update the CI for pipeline-level bwameth GPU Tests
4 participants
@sateeshperi @GallVp @mashehu @maxulysse