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fix vcf2db: add missing dependencies #3949

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Run time

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Job	Run time
nf-test-changes	24s
Test \| conda \| 1	4m 0s
Test \| docker_self_hosted \| 1	3m 4s
Test \| singularity \| 1	1m 24s
Test \| conda \| 2	3m 44s
Test \| docker_self_hosted \| 2	1m 37s
Test \| singularity \| 2	1m 59s
Test \| conda \| 3	2m 16s
Test \| docker_self_hosted \| 3	2m 54s
Test \| singularity \| 3	1m 35s
Test \| conda \| 4	1m 17s
Test \| docker_self_hosted \| 4	1m 37s
Test \| singularity \| 4	2m 5s
Test \| conda \| 5	58s
Test \| docker_self_hosted \| 5	32s
Test \| singularity \| 5	34s
confirm-pass	1s
	30m 1s