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port parabricks/indexgvcf to nf-test
Run tests #17369: Pull request #6996 synchronize by famosab
November 18, 2024 10:16 3m 40s famosab:indexg
November 18, 2024 10:16 3m 40s
Port parabricks/dbsnp to nf-test
Run tests #17368: Pull request #6977 synchronize by famosab
November 18, 2024 10:16 3h 54m 1s famosab:dbsnp
November 18, 2024 10:16 3h 54m 1s
update bcftools pluginsplit
Run tests #17367: Pull request #7013 synchronize by LouisLeNezet
November 18, 2024 10:06 6m 34s LouisLeNezet:bcftools_pluginsplit
November 18, 2024 10:06 6m 34s
Fastq align dedup bwameth
Run tests #17366: Pull request #7007 synchronize by sateeshperi
November 18, 2024 09:53 1s fastq_align_dedup_bwameth
November 18, 2024 09:53 1s
Added module trgt/merge
Run tests #17365: Pull request #7012 synchronize by Schmytzi
November 18, 2024 09:53 17m 7s Schmytzi:trgt-merge
November 18, 2024 09:53 17m 7s
Added module trgt/merge
Run tests #17364: Pull request #7012 synchronize by Schmytzi
November 18, 2024 09:53 43s Schmytzi:trgt-merge
November 18, 2024 09:53 43s
bump ALL gatk4 modules
Run tests #17363: Pull request #6917 synchronize by matthdsm
November 18, 2024 09:42 48m 50s matthdsm:bump/gatk
November 18, 2024 09:42 48m 50s
update bcftools pluginsplit
Run tests #17362: Pull request #7013 opened by LouisLeNezet
November 18, 2024 09:31 6m 49s LouisLeNezet:bcftools_pluginsplit
November 18, 2024 09:31 6m 49s
Fastq align dedup bwameth
Run tests #17361: Pull request #7007 synchronize by sateeshperi
November 18, 2024 09:23 1s fastq_align_dedup_bwameth
November 18, 2024 09:23 1s
bump ALL gatk4 modules
Run tests #17360: Pull request #6917 synchronize by matthdsm
November 18, 2024 09:07 36m 15s matthdsm:bump/gatk
November 18, 2024 09:07 36m 15s
improve workflow logic for fastq_align_dedup_bismark
Run tests #17359: Pull request #7005 synchronize by sateeshperi
November 18, 2024 08:51 8m 39s fix/fastq_align_dedup_bismark
November 18, 2024 08:51 8m 39s
bump ALL gatk4 modules
Run tests #17358: Pull request #6917 synchronize by matthdsm
November 18, 2024 08:34 34m 23s matthdsm:bump/gatk
November 18, 2024 08:34 34m 23s
port parabricks/genotypegvcf to nf-test
Run tests #17357: Pull request #6980 synchronize by famosab
November 18, 2024 08:29 1h 52m 6s famosab:genotypegvcf
November 18, 2024 08:29 1h 52m 6s
Port parabricks/dbsnp to nf-test
Run tests #17356: Pull request #6977 by famosab
November 18, 2024 08:29 Failure famosab:dbsnp
November 18, 2024 08:29 Failure
Added module trgt/merge
Run tests #17355: Pull request #7012 opened by Schmytzi
November 18, 2024 07:06 7m 4s Schmytzi:trgt-merge
November 18, 2024 07:06 7m 4s
Added module trgt/plot
Run tests #17354: Pull request #7003 synchronize by Schmytzi
November 18, 2024 06:55 8m 3s Schmytzi:trgt-plot
November 18, 2024 06:55 8m 3s
update preseq/lcextrap errorStrategy to ignore
Run tests #17353: Pull request #7011 opened by sateeshperi
November 18, 2024 05:37 10m 6s fix/preseq-lcextrap
November 18, 2024 05:37 10m 6s
Fastq align dedup bwameth
Run tests #17352: Pull request #7007 synchronize by sateeshperi
November 17, 2024 11:59 2s fastq_align_dedup_bwameth
November 17, 2024 11:59 2s
Fastq align dedup bwameth
Run tests #17351: Pull request #7007 synchronize by sateeshperi
November 17, 2024 11:53 1s fastq_align_dedup_bwameth
November 17, 2024 11:53 1s
Fastq align dedup bwameth
Run tests #17350: Pull request #7007 synchronize by sateeshperi
November 17, 2024 11:43 12m 23s fastq_align_dedup_bwameth
November 17, 2024 11:43 12m 23s
Fastq align dedup bwameth
Run tests #17349: Pull request #7007 synchronize by sateeshperi
November 17, 2024 11:28 14m 46s fastq_align_dedup_bwameth
November 17, 2024 11:28 14m 46s
Fasta index bismark bwameth
Run tests #17348: Pull request #7010 opened by sateeshperi
November 17, 2024 09:08 9m 38s fasta_create_index_bismark_bwameth
November 17, 2024 09:08 9m 38s
adding mgikit module
Run tests #17347: Pull request #7008 synchronize by ziadbkh
November 17, 2024 07:41 1m 7s ziadbkh:newmodule-mgikit
November 17, 2024 07:41 1m 7s
adding mgikit module
Run tests #17346: Pull request #7008 synchronize by ziadbkh
November 17, 2024 07:38 1m 2s ziadbkh:newmodule-mgikit
November 17, 2024 07:38 1m 2s
adding mgikit module
Run tests #17345: Pull request #7008 synchronize by ziadbkh
November 17, 2024 07:23 57s ziadbkh:newmodule-mgikit
November 17, 2024 07:23 57s