diff --git a/.github/workflows/gpu-tests.yml b/.github/workflows/gpu-tests.yml
index 78667065a3b..2a341360f04 100644
--- a/.github/workflows/gpu-tests.yml
+++ b/.github/workflows/gpu-tests.yml
@@ -29,7 +29,7 @@ env:
   NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
   NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
   # renovate: datasource=github-releases depName=nextflow-io/nextflow versioning=semver
-  NXF_VER: "24.10.1"
+  NXF_VER: "24.10.2"
 
 jobs:
   nf-test-changes:
@@ -108,13 +108,18 @@ jobs:
     needs: [nf-test-gpu]
     if: always()
     steps:
-      - name: All tests ok
-        if: ${{ success() || !contains(needs.*.result, 'failure') }}
-        run: exit 0
       - name: One or more tests failed
         if: ${{ contains(needs.*.result, 'failure') }}
         run: exit 1
 
+      - name: One or more tests cancelled
+        if: ${{ contains(needs.*.result, 'cancelled') }}
+        run: exit 1
+
+      - name: All tests ok
+        if: ${{ contains(needs.*.result, 'success') }}
+        run: exit 0
+
       - name: debug-print
         if: always()
         run: |
diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index f8c71275bf9..036c40f0880 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -32,7 +32,7 @@ env:
   NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
   NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
   # renovate: datasource=github-releases depName=nextflow/nextflow versioning=semver
-  NXF_VER: "24.10.1"
+  NXF_VER: "24.10.2"
 
 jobs:
   nf-test-changes:
@@ -110,13 +110,18 @@ jobs:
     needs: [nf-test]
     if: always()
     steps:
-      - name: All tests ok
-        if: ${{ success() || !contains(needs.*.result, 'failure') }}
-        run: exit 0
       - name: One or more tests failed
         if: ${{ contains(needs.*.result, 'failure') }}
         run: exit 1
 
+      - name: One or more tests cancelled
+        if: ${{ contains(needs.*.result, 'cancelled') }}
+        run: exit 1
+
+      - name: All tests ok
+        if: ${{ contains(needs.*.result, 'success') }}
+        run: exit 0
+
       - name: debug-print
         if: always()
         run: |
diff --git a/modules/nf-core/bwameth/align/tests/main.nf.test b/modules/nf-core/bwameth/align/tests/main.nf.test
index 37dd4ad2b08..87195e0c31a 100644
--- a/modules/nf-core/bwameth/align/tests/main.nf.test
+++ b/modules/nf-core/bwameth/align/tests/main.nf.test
@@ -117,5 +117,4 @@ nextflow_process {
             )
         }
     }
-
 }
diff --git a/modules/nf-core/foldmason/msa2lddtreport/environment.yml b/modules/nf-core/foldmason/msa2lddtreport/environment.yml
new file mode 100644
index 00000000000..80d4dd371d9
--- /dev/null
+++ b/modules/nf-core/foldmason/msa2lddtreport/environment.yml
@@ -0,0 +1,5 @@
+channels:
+  - conda-forge
+  - bioconda
+dependencies:
+  - bioconda::foldmason=2.7bd21ed
diff --git a/modules/nf-core/foldmason/msa2lddtreport/main.nf b/modules/nf-core/foldmason/msa2lddtreport/main.nf
new file mode 100644
index 00000000000..e07a7552b73
--- /dev/null
+++ b/modules/nf-core/foldmason/msa2lddtreport/main.nf
@@ -0,0 +1,52 @@
+process FOLDMASON_MSA2LDDTREPORT {
+    tag "$meta.id"
+    label 'process_medium'
+
+    conda "${moduleDir}/environment.yml"
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+            'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/a8/a88d162c3f39a1518d48c3faec235e6fcde750586da868b62fc5f0a08a89aa9d/data' :
+            'community.wave.seqera.io/library/foldmason:2.7bd21ed--e7f739473ad6578d' }"
+    input:
+    tuple val(meta) , path(msa)
+    tuple val(meta2), path(db)
+    tuple val(meta3), path(pdbs)
+    tuple val(meta4), path(tree)
+
+    output:
+    tuple val(meta), path("${prefix}.html"), emit: html
+    path "versions.yml"                    , emit: versions
+
+    when:
+    task.ext.when == null || task.ext.when
+
+    script:
+    def args = task.ext.args ?: ''
+    prefix = task.ext.prefix ?: "${meta.id}"
+    def options_tree = tree ? "--guide-tree $tree" : ""
+    """
+    foldmason msa2lddtreport \\
+        ${meta.id} \\
+        ${msa} \\
+        ${prefix}.html \\
+        $args \\
+        ${options_tree} \\
+        --threads $task.cpus
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        foldmason: \$(foldmason | grep "foldmason Version:" | cut -d":" -f 2 | awk '{\$1=\$1;print}')
+    END_VERSIONS
+    """
+
+    stub:
+    def args = task.ext.args ?: ''
+    prefix = task.ext.prefix ?: "${meta.id}"
+    """
+    touch ${prefix}.html
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        foldmason: \$(foldmason | grep "foldmason Version:" | cut -d":" -f 2 | awk '{\$1=\$1;print}')
+    END_VERSIONS
+    """
+}
diff --git a/modules/nf-core/foldmason/msa2lddtreport/meta.yml b/modules/nf-core/foldmason/msa2lddtreport/meta.yml
new file mode 100644
index 00000000000..cf9749acb07
--- /dev/null
+++ b/modules/nf-core/foldmason/msa2lddtreport/meta.yml
@@ -0,0 +1,74 @@
+name: "foldmason_msa2lddtreport"
+description: Renders a visualization report using foldmason
+keywords:
+  - alignment
+  - MSA
+  - genomics
+  - structure
+tools:
+  - "foldmason":
+      description: "Multiple Protein Structure Alignment at Scale with FoldMason"
+      homepage: "https://github.com/steineggerlab/foldmason"
+      documentation: "https://github.com/steineggerlab/foldmason"
+      tool_dev_url: "https://github.com/steineggerlab/foldmason"
+      doi: "10.1101/2024.08.01.606130"
+      licence: ["GPL v3"]
+      identifier: biotools:foldmason
+
+input:
+  - - meta:
+        type: map
+        description: |
+          Groovy Map containing sample information
+          e.g. `[ id:'sample1', single_end:false ]`
+    - msa:
+        type: file
+        description: Input alignment file.
+        pattern: "*.{fa,fasta,aln}"
+  - - meta2:
+        type: map
+        description: |
+          Groovy Map containing sample information
+          e.g. `[ id:'sample1', single_end:false ]`
+    - db:
+        type: file
+        description: Input foldmason database.
+        pattern: "*"
+  - - meta3:
+        type: map
+        description: |
+          Groovy Map containing sample information
+          e.g. `[ id:'sample1', single_end:false ]`
+    - pdbs:
+        type: file
+        description: Protein structures used for the visualization.
+        pattern: "*.{pdb}"
+  - - meta4:
+        type: map
+        description: |
+          Groovy Map containing sample information
+          e.g. `[ id:'sample1', single_end:false ]`
+    - tree:
+        type: file
+        description: Guide tree used for the visualization .
+        pattern: "*.{nwk,dnd}"
+output:
+  - html:
+      - meta:
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. `[ id:'sample1', single_end:false ]`
+      - "${prefix}.html":
+          type: file
+          description: HTML file with the foldmason visualization
+          pattern: "*.{html}"
+  - versions:
+      - versions.yml:
+          type: file
+          description: File containing software versions
+          pattern: "versions.yml"
+authors:
+  - "@luisas"
+maintainers:
+  - "@luisas"
diff --git a/modules/nf-core/foldmason/msa2lddtreport/tests/main.nf.test b/modules/nf-core/foldmason/msa2lddtreport/tests/main.nf.test
new file mode 100644
index 00000000000..b92c05d0704
--- /dev/null
+++ b/modules/nf-core/foldmason/msa2lddtreport/tests/main.nf.test
@@ -0,0 +1,101 @@
+nextflow_process {
+
+    name "Test Process FOLDMASON_MSA2LDDTREPORT"
+    script "../main.nf"
+    process "FOLDMASON_MSA2LDDTREPORT"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "foldmason"
+    tag "foldmason/msa2lddtreport"
+    tag "foldmason/createdb"
+    tag "untar"
+    tag "famsa/guidetree"
+
+
+    setup{
+        run("UNTAR") {
+            script "../../../../../modules/nf-core/untar/main.nf"
+                process {
+                    """
+                    archive = file("https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/af2_structures/seatoxin-ref.tar.gz", checkIfExists: true)
+                    input[0] = Channel.of(tuple([id:'test'], archive))
+                    """
+                }
+        }
+
+        run("FAMSA_GUIDETREE") {
+            script "../../../../../modules/nf-core/famsa/guidetree/main.nf"
+            process {
+                """
+                input[0] = [ [ id:'test_tree' ], // meta map
+                            file(params.modules_testdata_base_path + "../../multiplesequencealign/testdata/setoxin-ref.fa", checkIfExists: true)
+                            ]
+                """
+            }
+        }
+
+        run("FOLDMASON_CREATEDB") {
+            script "../../../../../modules/nf-core/foldmason/createdb/main.nf"
+            process {
+                """
+                input[0] = UNTAR.out.untar.map { meta,dir -> [meta, file(dir).listFiles().collect()]}
+                """
+            }
+        }
+
+
+    }
+
+    test("seatoxin") {
+
+
+        when {
+            process {
+                """
+                input[0] =[ [ id:'test' ], // meta map
+                            file(params.modules_testdata_base_path + "../../multiplesequencealign/testdata/setoxin.ref", checkIfExists: true)
+                            ]
+                input[1] = FOLDMASON_CREATEDB.out.db.collect{ meta, db -> db }.map{ db -> [[ id: 'test'], db]}
+                input[2] = UNTAR.out.untar.map { meta,dir -> [meta, file(dir).listFiles().collect()]}
+                input[3] = FAMSA_GUIDETREE.out.tree.collect{ meta, tree -> tree }.map{ tree -> [[ id: 'test_tree'], tree]}
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+
+    }
+
+    test("seatixin - stub") {
+
+        options "-stub"
+
+        when {
+            process {
+                """
+                input[0] =[ [ id:'test_tree' ], // meta map
+                            file(params.modules_testdata_base_path + "../../multiplesequencealign/testdata/setoxin.ref", checkIfExists: true)
+                            ]
+                input[1] = FOLDMASON_CREATEDB.out.db.collect{ meta, db -> db }.map{ db -> [[ id: 'test'], db]}
+                input[2] = UNTAR.out.untar.map { meta,dir -> [meta, file(dir).listFiles().collect()]}
+                input[3] = FAMSA_GUIDETREE.out.tree.collect{ meta, tree -> tree }.map{ tree -> [[ id: 'test_tree'], tree]}
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+
+    }
+
+}
diff --git a/modules/nf-core/foldmason/msa2lddtreport/tests/main.nf.test.snap b/modules/nf-core/foldmason/msa2lddtreport/tests/main.nf.test.snap
new file mode 100644
index 00000000000..da11cfad2df
--- /dev/null
+++ b/modules/nf-core/foldmason/msa2lddtreport/tests/main.nf.test.snap
@@ -0,0 +1,68 @@
+{
+    "seatixin - stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test_tree"
+                        },
+                        "test_tree.html:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,ed922d0faa7a3e3c8171a05296939468"
+                ],
+                "html": [
+                    [
+                        {
+                            "id": "test_tree"
+                        },
+                        "test_tree.html:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,ed922d0faa7a3e3c8171a05296939468"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.2"
+        },
+        "timestamp": "2024-12-10T09:36:23.360594258"
+    },
+    "seatoxin": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.html:md5,7a90a8e674dc45ce4181498b8f53b519"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,ed922d0faa7a3e3c8171a05296939468"
+                ],
+                "html": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.html:md5,7a90a8e674dc45ce4181498b8f53b519"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,ed922d0faa7a3e3c8171a05296939468"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.2"
+        },
+        "timestamp": "2024-12-10T09:54:03.711567262"
+    }
+}
\ No newline at end of file
diff --git a/modules/nf-core/megahit/main.nf b/modules/nf-core/megahit/main.nf
index f6e50f94d43..db0612422bd 100644
--- a/modules/nf-core/megahit/main.nf
+++ b/modules/nf-core/megahit/main.nf
@@ -25,7 +25,7 @@ process MEGAHIT {
     def args = task.ext.args ?: ''
     def args2 = task.ext.args2 ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
-    def reads_command = meta.single_end || !reads2 ? "-r ${reads1}" : "-1 ${reads1.join(',')} -2 ${reads2.join(',')}"
+    def reads_command = meta.single_end || !reads2 ? "-r ${reads1.join(',')}" : "-1 ${reads1.join(',')} -2 ${reads2.join(',')}"
     """
     megahit \\
         ${reads_command} \\
diff --git a/modules/nf-core/ngsbits/samplegender/environment.yml b/modules/nf-core/ngsbits/samplegender/environment.yml
index 932d1556a7a..98be7c334ec 100644
--- a/modules/nf-core/ngsbits/samplegender/environment.yml
+++ b/modules/nf-core/ngsbits/samplegender/environment.yml
@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::ngs-bits=2023_02
+  - bioconda::ngs-bits=2024_11
diff --git a/modules/nf-core/ngsbits/samplegender/main.nf b/modules/nf-core/ngsbits/samplegender/main.nf
index 3562238dfcd..6551490845c 100644
--- a/modules/nf-core/ngsbits/samplegender/main.nf
+++ b/modules/nf-core/ngsbits/samplegender/main.nf
@@ -4,13 +4,13 @@ process NGSBITS_SAMPLEGENDER {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/ngs-bits:2023_02--py311ha0b7adc_2':
-        'biocontainers/ngs-bits:2023_02--py311ha0b7adc_2' }"
+        'https://depot.galaxyproject.org/singularity/ngs-bits:2024_11--py312hd80e9a6_0':
+        'biocontainers/ngs-bits:2024_11--py312hd80e9a6_0' }"
 
     input:
     tuple val(meta), path(bam), path(bai)
     tuple val(meta2), path(fasta)
-    tuple val(meta2), path(fai)
+    tuple val(meta3), path(fai)
     val method
 
     output:
diff --git a/modules/nf-core/ngsbits/samplegender/meta.yml b/modules/nf-core/ngsbits/samplegender/meta.yml
index 54a611812df..fd5a55024c2 100644
--- a/modules/nf-core/ngsbits/samplegender/meta.yml
+++ b/modules/nf-core/ngsbits/samplegender/meta.yml
@@ -36,7 +36,7 @@ input:
         type: file
         description: The reference FASTA to use (mandatory when CRAM files are used)
         pattern: "*.{fasta,fa,fna}"
-  - - meta2:
+  - - meta3:
         type: map
         description: |
           Groovy Map containing reference fasta information
diff --git a/modules/nf-core/ngsbits/samplegender/tests/main.nf.test b/modules/nf-core/ngsbits/samplegender/tests/main.nf.test
index 4f8379b4022..0917b7ddeed 100644
--- a/modules/nf-core/ngsbits/samplegender/tests/main.nf.test
+++ b/modules/nf-core/ngsbits/samplegender/tests/main.nf.test
@@ -9,7 +9,7 @@ nextflow_process {
     tag "ngsbits"
     tag "ngsbits/samplegender"
 
-    // Only a stub test here because the modules needs the full chrX and chrY
+    // Only a stub test here because the module needs the full chrX and chrY
     test("homo_sapiens - bam, bai, [], [], sry - stub") {
 
         options "-stub"
diff --git a/modules/nf-core/ngsbits/samplegender/tests/main.nf.test.snap b/modules/nf-core/ngsbits/samplegender/tests/main.nf.test.snap
index 48fd8af9c12..cb493a2c25b 100644
--- a/modules/nf-core/ngsbits/samplegender/tests/main.nf.test.snap
+++ b/modules/nf-core/ngsbits/samplegender/tests/main.nf.test.snap
@@ -11,7 +11,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,72f3e70be3e6a734bf39d1a6bf6d604b"
+                    "versions.yml:md5,9c2c2b8cf880d89b4eb1c06e3b7f7333"
                 ],
                 "tsv": [
                     [
@@ -22,14 +22,14 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,72f3e70be3e6a734bf39d1a6bf6d604b"
+                    "versions.yml:md5,9c2c2b8cf880d89b4eb1c06e3b7f7333"
                 ]
             }
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.02.0"
+            "nf-test": "0.9.1",
+            "nextflow": "24.10.1"
         },
-        "timestamp": "2024-03-18T15:36:37.639882564"
+        "timestamp": "2024-12-10T13:36:08.650020628"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/parabricks/fq2bammeth/main.nf b/modules/nf-core/parabricks/fq2bammeth/main.nf
index 44f266604bd..eb7ae685b71 100644
--- a/modules/nf-core/parabricks/fq2bammeth/main.nf
+++ b/modules/nf-core/parabricks/fq2bammeth/main.nf
@@ -27,14 +27,15 @@ process PARABRICKS_FQ2BAMMETH {
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
         error "Parabricks module does not support Conda. Please use Docker / Singularity / Podman instead."
     }
-    def args = task.ext.args ?: ''
-    def prefix = task.ext.prefix ?: "${meta.id}"
-    def in_fq_command = meta.single_end ? "--in-se-fq $reads" : "--in-fq $reads"
+    def args                = task.ext.args ?: ''
+    def prefix              = task.ext.prefix ?: "${meta.id}"
+    def in_fq_command       = meta.single_end ? "--in-se-fq $reads" : "--in-fq $reads"
     def known_sites_command = known_sites ? known_sites.collect{"--knownSites $it"}.join(' ') : ""
-    def known_sites_output = known_sites ? "--out-recal-file ${prefix}.table" : ""
-    def num_gpus = task.accelerator ? "--num-gpus $task.accelerator.request" : ''
+    def known_sites_output  = known_sites ? "--out-recal-file ${prefix}.table" : ""
+    def num_gpus            = task.accelerator ? "--num-gpus $task.accelerator.request" : ''
     """
     ln -sf \$(readlink $fasta) $index/$fasta
+
     pbrun \\
         fq2bam_meth \\
         --ref $index/$fasta \\
@@ -44,6 +45,7 @@ process PARABRICKS_FQ2BAMMETH {
         $known_sites_output \\
         $num_gpus \\
         $args
+
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
         pbrun: \$(echo \$(pbrun version 2>&1) | sed 's/^Please.* //' )
@@ -55,11 +57,11 @@ process PARABRICKS_FQ2BAMMETH {
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
         error "Parabricks module does not support Conda. Please use Docker / Singularity / Podman instead."
     }
-    def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
     """
     touch ${prefix}.bam
     touch ${prefix}.bam.bai
+
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
         pbrun: \$(echo \$(pbrun version 2>&1) | sed 's/^Please.* //' )
diff --git a/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test b/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test
index 459eb6317db..ce89e8cac9f 100644
--- a/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test
+++ b/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test
@@ -5,12 +5,12 @@ nextflow_process {
     process "PARABRICKS_FQ2BAMMETH"
     config "./nextflow.config"
 
+    tag "gpu"
     tag "bwameth/index"
     tag "modules"
     tag "parabricks"
     tag "parabricks/fq2bammeth"
     tag "modules_nfcore"
-    tag "gpu"
 
     setup {
         run("BWAMETH_INDEX") {
@@ -26,8 +26,7 @@ nextflow_process {
         }
     }
 
-
-    test("SRR389222 - fastq - se") {
+    test("SRR389222 single-end [fastq]") {
 
         when {
             process {
@@ -60,7 +59,7 @@ nextflow_process {
         }
     }
 
-    test("SRR389222 - fastq - se - stub") {
+    test("SRR389222 single-end [fastq] - stub") {
         options '-stub'
 
         when {
@@ -90,7 +89,7 @@ nextflow_process {
         }
     }
 
-    test("E. coli - fastq - pe - stub") {
+    test("E.coli paired-end [fastq] - stub") {
         options '-stub'
 
         when {
diff --git a/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test.snap b/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test.snap
index cf06f28c7b3..21ae222c254 100644
--- a/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test.snap
+++ b/modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test.snap
@@ -1,5 +1,5 @@
 {
-    "SRR389222 - fastq - se - stub": {
+    "SRR389222 single-end [fastq] - stub": {
         "content": [
             {
                 "0": [
@@ -21,13 +21,13 @@
                     ]
                 ],
                 "2": [
-                    
+
                 ],
                 "3": [
-                    
+
                 ],
                 "4": [
-                    
+
                 ],
                 "5": [
                     "versions.yml:md5,882d996a64ad457fcaf85e3a75514baf"
@@ -51,13 +51,13 @@
                     ]
                 ],
                 "bqsr_table": [
-                    
+
                 ],
                 "duplicate_metrics": [
-                    
+
                 ],
                 "qc_metrics": [
-                    
+
                 ],
                 "versions": [
                     "versions.yml:md5,882d996a64ad457fcaf85e3a75514baf"
@@ -70,7 +70,7 @@
         },
         "timestamp": "2024-11-12T11:20:10.809580487"
     },
-    "E. coli - fastq - pe - stub": {
+    "E.coli paired-end [fastq] - stub": {
         "content": [
             {
                 "0": [
@@ -92,13 +92,13 @@
                     ]
                 ],
                 "2": [
-                    
+
                 ],
                 "3": [
-                    
+
                 ],
                 "4": [
-                    
+
                 ],
                 "5": [
                     "versions.yml:md5,882d996a64ad457fcaf85e3a75514baf"
@@ -122,13 +122,13 @@
                     ]
                 ],
                 "bqsr_table": [
-                    
+
                 ],
                 "duplicate_metrics": [
-                    
+
                 ],
                 "qc_metrics": [
-                    
+
                 ],
                 "versions": [
                     "versions.yml:md5,882d996a64ad457fcaf85e3a75514baf"
@@ -141,7 +141,7 @@
         },
         "timestamp": "2024-11-12T11:20:18.927598721"
     },
-    "SRR389222 - fastq - se": {
+    "SRR389222 single-end [fastq]": {
         "content": [
             "a7f7ca7b5eb503ab58790d64a0273ed6",
             [
@@ -163,4 +163,4 @@
         },
         "timestamp": "2024-10-26T21:29:14.709022"
     }
-}
\ No newline at end of file
+}