From 2516a34ff7876ef1f195beb7d36516b38f1240f6 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Tue, 24 Sep 2024 08:53:51 -0500 Subject: [PATCH] chore: Copy over conda skips https://github.com/nf-core/modules/commit/a004c86eea62d4eed15768c0edb3adcc3f2c1424 https://github.com/nf-core/modules/commit/2da71b7a52a7c6609cb8f29d316ed3fd90d0f7cc --- .github/conda_skip.yml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/.github/conda_skip.yml b/.github/conda_skip.yml index 44e43a740a4c..801fb9616fcc 100644 --- a/.github/conda_skip.yml +++ b/.github/conda_skip.yml @@ -45,6 +45,14 @@ # path: modules/nf-core/deepcell/mesmer # - profile: conda # path: modules/nf-core/deepvariant +- profile: conda + path: modules/nf-core/deepvariant/callvariants +- profile: conda + path: modules/nf-core/deepvariant/makeexamples +- profile: conda + path: modules/nf-core/deepvariant/postprocessvariants +- profile: conda + path: modules/nf-core/deepvariant/rundeepvariant # - profile: conda # path: modules/nf-core/ensemblvep/vep # - profile: conda @@ -97,6 +105,8 @@ # path: modules/nf-core/sentieon/bwaindex # - profile: conda # path: modules/nf-core/sentieon/bwamem +- profile: conda + path: modules/nf-core/sentieon/datametrics # - profile: conda # path: modules/nf-core/sentieon/dedup # - profile: conda @@ -127,6 +137,8 @@ # path: subworkflows/nf-core/vcf_annotate_ensemblvep # - profile: conda # path: subworkflows/nf-core/bcl_demultiplex +- profile: conda + path: subworkflows/nf-core/deepvariant # - profile: conda # path: subworkflows/nf-core/fastq_align_bamcmp_bwa # - profile: conda