migrate vcf2db to wave (#7022)

nf-core · Nov 19, 2024 · 2a1ee18 · 2a1ee18
1 parent c0ef8c3
commit 2a1ee18
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diff --git a/modules/nf-core/vcf2db/environment.yml b/modules/nf-core/vcf2db/environment.yml
@@ -1,5 +1,12 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
 dependencies:
+  # renovate: datasource=conda depName=conda-forge/python
+  - conda-forge::python=2.7
+  # renovate: datasource=conda depName=bioconda/cyvcf2
+  - bioconda::cyvcf2=0.20.9
+  # renovate: datasource=conda depName=bioconda/vcf2db
   - bioconda::vcf2db=2020.02.24
diff --git a/modules/nf-core/vcf2db/main.nf b/modules/nf-core/vcf2db/main.nf
@@ -5,8 +5,8 @@ process VCF2DB {
     // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/vcf2db:2020.02.24--pl5321hdfd78af_3':
-        'biocontainers/vcf2db:2020.02.24--pl5321hdfd78af_3' }"
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/14/14d1257c98f789e23a888e2961673b5b98d89e4d03e6a3efba2b1134ed439f61/data':
+        'community.wave.seqera.io/library/python_vcf2db:91f604106ada5cf2' }"
 
     input:
     tuple val(meta), path(vcf), path(ped)