From 64cadad8b9618692763b6459c572660e7d3d862a Mon Sep 17 00:00:00 2001
From: ziadbkh <ziadbkh@gmail.com>
Date: Sun, 17 Nov 2024 18:37:08 +1100
Subject: [PATCH] fix meta info

---
 modules/nf-core/mgikit/demultipex/meta.yml | 162 ++++++++++-----------
 1 file changed, 81 insertions(+), 81 deletions(-)

diff --git a/modules/nf-core/mgikit/demultipex/meta.yml b/modules/nf-core/mgikit/demultipex/meta.yml
index 3cc71748d17..fb3dae02762 100644
--- a/modules/nf-core/mgikit/demultipex/meta.yml
+++ b/modules/nf-core/mgikit/demultipex/meta.yml
@@ -11,114 +11,114 @@ tools:
       documentation: "https://sagc-bioinformatics.github.io/mgikit/"
       licence: "https://github.com/sagc-bioinformatics/mgikit/blob/main/LICENSE"
 input:
-  - meta:
-      type: map
-      description: |
-        Groovy Map containing sample information
-        e.g. [ id:'test', single_end:false ]
-  - samplesheet:
-      type: file
-      description: "Input samplesheet"
-      pattern: "*.{csv}"
-  - run_dir:
-      type: file
-      description: |
-        Input run directory containing BioInfo.csv and fastq data.
-        fastq files should be in MGI format and can be either single or paired end.
+  - - meta:
+        type: map
+        description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
+    - samplesheet:
+        type: file
+        description: "Input samplesheet"
+        pattern: "*.{csv}"
+    - run_dir:
+        type: file
+        description: |
+            Input run directory containing BioInfo.csv and fastq data.
+            fastq files should be in MGI format and can be either single or paired end.
 output:
-  - versions:
-      type: file
-      description: File containing software versions
-      pattern: "versions.yml"
   - fastq:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "*.fastq.gz":
-        type: file
-        description: Demultiplexed sample FASTQ files
-        pattern: "*.fastq.gz"
+            type: file
+            description: Demultiplexed sample FASTQ files
+            pattern: "*.fastq.gz"
   - undetermined:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "Undetermined*.fastq.gz":
-        type: file
-        description: Optional undetermined sample FASTQ files
-        pattern: "Undetermined*.fastq.gz"
+            type: file
+            description: Optional undetermined sample FASTQ files
+            pattern: "Undetermined*.fastq.gz"
   - ambiguous:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "Ambiguous*.fastq.gz":
-        type: file
-        description: Optional ambiguous sample FASTQ files
-        pattern: "Ambiguous*.fastq.gz"
+            type: file
+            description: Optional ambiguous sample FASTQ files
+            pattern: "Ambiguous*.fastq.gz"
   - undetermined_reports:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "*mgikit.undetermined_barcode*":
-        type: file
-        description: Optional undetermined barcodes (complete and top 20 frequent barcodes).
-        pattern: "*mgikit.undetermined_barcode*"
+            type: file
+            description: Optional undetermined barcodes (complete and top 20 frequent barcodes).
+            pattern: "*mgikit.undetermined_barcode*"
   - ambiguous_reports:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "*mgikit.ambiguous_barcode*":
-        type: file
-        description: Optional ambiguous barcodes (complete and top 20 frequent barcodes).
-        pattern: "*mgikit.ambiguous_barcode*"
+            type: file
+            description: Optional ambiguous barcodes (complete and top 20 frequent barcodes).
+            pattern: "*mgikit.ambiguous_barcode*"
   - general_info_reports:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "*mgikit.general":
-        type: file
-        description: information on reads count and quality per sample.
-        pattern: "*mgikit.general"
+            type: file
+            description: information on reads count and quality per sample.
+            pattern: "*mgikit.general"
   - index_reports:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "*mgikit.info":
-        type: file
-        description: Index information per sample.
-        pattern: "*mgikit.info"
+            type: file
+            description: Index information per sample.
+            pattern: "*mgikit.info"
   - sample_stat_reports:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "*mgikit.sample_stats":
-        type: file
-        description: Sample stats containing information on reads count and quality per sample.
-        pattern: "*mgikit.sample_stats"
+            type: file
+            description: Sample stats containing information on reads count and quality per sample.
+            pattern: "*mgikit.sample_stats"
   - qc_reports:
       - meta:
-        type: map
-        description: |
-          Groovy Map containing sample information
-          e.g. [ id:'test', single_end:false ]
+            type: map
+            description: |
+                Groovy Map containing sample information
+                e.g. [ id:'test', single_end:false ]
       - "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}":
-        type: file
-        description: Demultiplexing Quality Reports
-        pattern: "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}"
+            type: file
+            description: Demultiplexing Quality Reports
+            pattern: "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}"
+  - versions:
+    type: file
+    description: File containing software versions
+    pattern: "versions.yml"
 authors:
   - "@ziadbkh"