diff --git a/subworkflows/nf-core/cellbender_empty_droplet_removal/meta.yml b/subworkflows/nf-core/cellbender_empty_droplet_removal/meta.yml index 9315f5ff836..cbf76f473a8 100644 --- a/subworkflows/nf-core/cellbender_empty_droplet_removal/meta.yml +++ b/subworkflows/nf-core/cellbender_empty_droplet_removal/meta.yml @@ -1,6 +1,5 @@ -# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json name: "cellbender_empty_droplet_removal" -description: Remove empty droplet Cellbender features including background noise removal and empty droplet detection +description: Use features of Cellbender to remove background noise and empty droplet keywords: - scdownstream - cellbender @@ -9,35 +8,28 @@ components: - cellbender/removebackground - anndata/barcodes input: - - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test' ] - - h5ad: - type: file - description: AnnData file of unfiltered data - pattern: "*.h5ad" + - ch_unfiltered: + type: file + description: | + The input channel containing the unfiltered AnnData file to process + and remove background noise and empty droplets + Structure: [ val(meta), path(h5ad) ] + pattern: "*.h5ad" output: - h5ad: - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test' ] - pattern: "*.h5ad" - - "*.h5ad": - type: file - description: | - AnnData file containing cells with barcodes exceeding 0.5 posterior cell probability determined by cellbender remove-backgroud - pattern: "*.h5ad" + description: | + Background and empty droplet removed AnnData file containing cells with + barcodes exceeding 0.5 posterior cell probability determined by the + cellbender's remove-background + Structure: [ val(meta), path(h5ad) ] + pattern: "*.h5ad" - versions: - - versions.yml: - type: file - description: File containing software versions - pattern: "versions.yml" + type: file + description: | + File containing software versions + pattern: "versions.yml" authors: - "@nictru" - - "@chaochaowong" + - "@chaochaowong" maintainers: - "@nictru"