MEGAHIT: fix single-end input (#7190)

* Fix space to command separated lst * Put hte join the right place
nf-core · Dec 10, 2024 · 9142b39 · 9142b39
1 parent d3555a4
commit 9142b39
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/megahit/main.nf b/modules/nf-core/megahit/main.nf
@@ -25,7 +25,7 @@ process MEGAHIT {
     def args = task.ext.args ?: ''
     def args2 = task.ext.args2 ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
-    def reads_command = meta.single_end || !reads2 ? "-r ${reads1}" : "-1 ${reads1.join(',')} -2 ${reads2.join(',')}"
+    def reads_command = meta.single_end || !reads2 ? "-r ${reads1.join(',')}" : "-1 ${reads1.join(',')} -2 ${reads2.join(',')}"
     """
     megahit \\
         ${reads_command} \\