From e633cde8de6d9f3f992fcd2c9fa731f612dc43b3 Mon Sep 17 00:00:00 2001 From: ziadbkh Date: Sun, 17 Nov 2024 18:37:50 +1100 Subject: [PATCH] fix meta info --- modules/nf-core/mgikit/demultipex/meta.yml | 134 ++++++++++----------- 1 file changed, 67 insertions(+), 67 deletions(-) diff --git a/modules/nf-core/mgikit/demultipex/meta.yml b/modules/nf-core/mgikit/demultipex/meta.yml index fb3dae02762..7637f0eabb3 100644 --- a/modules/nf-core/mgikit/demultipex/meta.yml +++ b/modules/nf-core/mgikit/demultipex/meta.yml @@ -14,8 +14,8 @@ input: - - meta: type: map description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - samplesheet: type: file description: "Input samplesheet" @@ -23,99 +23,99 @@ input: - run_dir: type: file description: | - Input run directory containing BioInfo.csv and fastq data. - fastq files should be in MGI format and can be either single or paired end. + Input run directory containing BioInfo.csv and fastq data. + fastq files should be in MGI format and can be either single or paired end. output: - fastq: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "*.fastq.gz": - type: file - description: Demultiplexed sample FASTQ files - pattern: "*.fastq.gz" + type: file + description: Demultiplexed sample FASTQ files + pattern: "*.fastq.gz" - undetermined: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "Undetermined*.fastq.gz": - type: file - description: Optional undetermined sample FASTQ files - pattern: "Undetermined*.fastq.gz" + type: file + description: Optional undetermined sample FASTQ files + pattern: "Undetermined*.fastq.gz" - ambiguous: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "Ambiguous*.fastq.gz": - type: file - description: Optional ambiguous sample FASTQ files - pattern: "Ambiguous*.fastq.gz" + type: file + description: Optional ambiguous sample FASTQ files + pattern: "Ambiguous*.fastq.gz" - undetermined_reports: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "*mgikit.undetermined_barcode*": - type: file - description: Optional undetermined barcodes (complete and top 20 frequent barcodes). - pattern: "*mgikit.undetermined_barcode*" + type: file + description: Optional undetermined barcodes (complete and top 20 frequent barcodes). + pattern: "*mgikit.undetermined_barcode*" - ambiguous_reports: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "*mgikit.ambiguous_barcode*": - type: file - description: Optional ambiguous barcodes (complete and top 20 frequent barcodes). - pattern: "*mgikit.ambiguous_barcode*" + type: file + description: Optional ambiguous barcodes (complete and top 20 frequent barcodes). + pattern: "*mgikit.ambiguous_barcode*" - general_info_reports: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "*mgikit.general": - type: file - description: information on reads count and quality per sample. - pattern: "*mgikit.general" + type: file + description: information on reads count and quality per sample. + pattern: "*mgikit.general" - index_reports: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "*mgikit.info": - type: file - description: Index information per sample. - pattern: "*mgikit.info" + type: file + description: Index information per sample. + pattern: "*mgikit.info" - sample_stat_reports: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "*mgikit.sample_stats": - type: file - description: Sample stats containing information on reads count and quality per sample. - pattern: "*mgikit.sample_stats" + type: file + description: Sample stats containing information on reads count and quality per sample. + pattern: "*mgikit.sample_stats" - qc_reports: - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test', single_end:false ] - "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}": - type: file - description: Demultiplexing Quality Reports - pattern: "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}" + type: file + description: Demultiplexing Quality Reports + pattern: "mgikit.{info,general,ambiguous_barcode,undetermined_barcode}" - versions: type: file description: File containing software versions