diff --git a/modules/nf-core/nacho/normalize/meta.yml b/modules/nf-core/nacho/normalize/meta.yml index 8fddb762e3a..96e9a541a72 100644 --- a/modules/nf-core/nacho/normalize/meta.yml +++ b/modules/nf-core/nacho/normalize/meta.yml @@ -21,7 +21,7 @@ tools: homepage: https://github.com/mcanouil/NACHO documentation: https://cran.r-project.org/web/packages/NACHO/vignettes/NACHO.html doi: "10.1093/bioinformatics/btz647" - licence: [ "GPL-3.0" ] + licence: ["GPL-3.0"] identifier: "" args_id: "$args" @@ -49,34 +49,34 @@ input: output: - normalized_counts: - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test' ] - - "normalized_counts.tsv": - type: file - description: | - Tab-separated file with gene normalized counts for the samples - pattern: "normalized_counts.tsv" + - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test' ] + - "normalized_counts.tsv": + type: file + description: | + Tab-separated file with gene normalized counts for the samples + pattern: "normalized_counts.tsv" - normalized_counts_wo_HK: - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test' ] - - "normalized_counts_wo_HKnorm.tsv": - type: file - description: | - Tab-separated file with gene normalized counts for the samples, without housekeeping genes. - pattern: "normalized_counts_wo_HKnorm.tsv" + - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test' ] + - "normalized_counts_wo_HKnorm.tsv": + type: file + description: | + Tab-separated file with gene normalized counts for the samples, without housekeeping genes. + pattern: "normalized_counts_wo_HKnorm.tsv" - versions: - - "versions.yml": - type: file - description: | - File containing software versions - pattern: "versions.yml" + - "versions.yml": + type: file + description: | + File containing software versions + pattern: "versions.yml" authors: - "@alanmmobbs93" diff --git a/modules/nf-core/nacho/qc/meta.yml b/modules/nf-core/nacho/qc/meta.yml index f3c14934bd4..6d5aaadc6c9 100644 --- a/modules/nf-core/nacho/qc/meta.yml +++ b/modules/nf-core/nacho/qc/meta.yml @@ -20,7 +20,7 @@ tools: homepage: https://github.com/mcanouil/NACHO documentation: https://cran.r-project.org/web/packages/NACHO/vignettes/NACHO.html doi: "10.1093/bioinformatics/btz647" - licence: [ "GPL-3.0" ] + licence: ["GPL-3.0"] identifier: "" input: - - meta: @@ -45,44 +45,44 @@ input: Comma-separated file with 3 columns: RCC_FILE, RCC_FILE_NAME, and SAMPLE_ID output: - nacho_qc_reports: - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test' ] - - "*.html": - type: file - description: | - HTML report - pattern: "*.html" + - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test' ] + - "*.html": + type: file + description: | + HTML report + pattern: "*.html" - nacho_qc_png: - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test' ] - - "*_mqc.png": - type: file - description: | - Output PNG files - pattern: "*_mqc.png" + - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test' ] + - "*_mqc.png": + type: file + description: | + Output PNG files + pattern: "*_mqc.png" - nacho_qc_txt: - - meta: - type: map - description: | - Groovy Map containing sample information - e.g. [ id:'test' ] - - "*_mqc.txt": - type: file - description: | - Plain text reports - pattern: "*_mqc.txt" + - meta: + type: map + description: | + Groovy Map containing sample information + e.g. [ id:'test' ] + - "*_mqc.txt": + type: file + description: | + Plain text reports + pattern: "*_mqc.txt" - versions: - - "versions.yml": - type: file - description: | - File containing software versions - pattern: "versions.yml" + - "versions.yml": + type: file + description: | + File containing software versions + pattern: "versions.yml" authors: - "@alanmmobbs93" maintainers: