diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index b908d9aa2e3..26f13152afa 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -35,8 +35,8 @@ jobs:
   pre-commit:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
-      - uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+      - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
       - uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # v3.0.1
         with:
           extra_args: ""
@@ -56,7 +56,7 @@ jobs:
       subworkflows: ${{ steps.filter.outputs.subworkflows }}
       subworkflows_files: ${{ steps.subworkflow_names.outputs.result }}
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
         with:
           fetch-depth: 2 # To retrieve the preceding commit.
 
@@ -104,14 +104,14 @@ jobs:
       matrix:
         module: "${{ fromJson(needs.nf-core-changes.outputs.modules_files) }}"
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
 
       - name: Set up Python
-        uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3 # v5
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
         with:
           python-version: "3.11"
 
-      - uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4
+      - uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4
         id: cache-pip
         with:
           path: ~/.cache/pip
@@ -122,7 +122,7 @@ jobs:
       - name: Install pip
         run: python -m pip install --upgrade pip
 
-      - uses: actions/setup-java@b36c23c0d998641eff861008f374ee103c25ac73 # v4
+      - uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
         with:
           distribution: "temurin"
           java-version: "17"
@@ -146,17 +146,17 @@ jobs:
       matrix:
         subworkflow: "${{ fromJson(needs.nf-core-changes.outputs.subworkflows_files) }}"
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
 
       - name: Set up Python
-        uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3 # v5
+        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
         with:
           python-version: "3.11"
 
       - name: Install pip
         run: python -m pip install --upgrade pip
 
-      - uses: actions/setup-java@b36c23c0d998641eff861008f374ee103c25ac73 # v4
+      - uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
         with:
           distribution: "temurin"
           java-version: "17"
diff --git a/.github/workflows/pytest-workflow.yml b/.github/workflows/pytest-workflow.yml
index 66112152252..49a73467b99 100644
--- a/.github/workflows/pytest-workflow.yml
+++ b/.github/workflows/pytest-workflow.yml
@@ -40,7 +40,7 @@ jobs:
       modules: ${{ steps.tags.outputs.modules }}
       subworkflows: ${{ steps.tags.outputs.subworkflows }}
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
         with:
           fetch-depth: 2 # To retrieve the preceding commit.