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Remove compressed flag from all mmseqs modules #7211

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Remove compressed flag from all mmseqs modules #7211

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3 changes: 1 addition & 2 deletions modules/nf-core/mmseqs/cluster/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -34,8 +34,7 @@ process MMSEQS_CLUSTER {
${prefix}/${prefix} \\
tmp1 \\
$args \\
--threads ${task.cpus} \\
--compressed 1
--threads ${task.cpus}

cat <<-END_VERSIONS > versions.yml
"${task.process}":
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3 changes: 1 addition & 2 deletions modules/nf-core/mmseqs/createdb/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -33,8 +33,7 @@ process MMSEQS_CREATEDB {
createdb \\
${sequence_name} \\
${prefix}/${prefix} \\
$args \\
--compressed 1
$args

cat <<-END_VERSIONS > versions.yml
"${task.process}":
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3 changes: 1 addition & 2 deletions modules/nf-core/mmseqs/createindex/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -30,8 +30,7 @@ process MMSEQS_CREATEINDEX {
\${DB_INPUT_PATH_NAME} \\
tmp1 \\
$args \\
--threads ${task.cpus} \\
--compressed 1
--threads ${task.cpus}

cat <<-END_VERSIONS > versions.yml
"${task.process}":
Expand Down
3 changes: 1 addition & 2 deletions modules/nf-core/mmseqs/createtsv/main.nf
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Expand Up @@ -40,8 +40,7 @@ process MMSEQS_CREATETSV {
\$DB_RESULT_PATH_NAME \\
${prefix}.tsv \\
$args \\
--threads ${task.cpus} \\
--compressed 1
--threads ${task.cpus}

cat <<-END_VERSIONS > versions.yml
"${task.process}":
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1 change: 0 additions & 1 deletion modules/nf-core/mmseqs/databases/main.nf
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Expand Up @@ -28,7 +28,6 @@ process MMSEQS_DATABASES {
${prefix}/database \\
tmp/ \\
--threads ${task.cpus} \\
--compressed 1 \\
${args}

cat <<-END_VERSIONS > versions.yml
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3 changes: 1 addition & 2 deletions modules/nf-core/mmseqs/easysearch/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -36,8 +36,7 @@ process MMSEQS_EASYSEARCH {
${prefix}.tsv \\
tmp1 \\
$args \\
--threads ${task.cpus} \\
--compressed 1
--threads ${task.cpus}


cat <<-END_VERSIONS > versions.yml
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3 changes: 1 addition & 2 deletions modules/nf-core/mmseqs/linclust/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -34,8 +34,7 @@ process MMSEQS_LINCLUST {
${prefix}/${prefix} \\
tmp1 \\
$args \\
--threads ${task.cpus} \\
--compressed 1
--threads ${task.cpus}

cat <<-END_VERSIONS > versions.yml
"${task.process}":
Expand Down
4 changes: 1 addition & 3 deletions modules/nf-core/mmseqs/search/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -40,9 +40,7 @@ process MMSEQS_SEARCH {
${prefix}/${prefix} \\
tmp1 \\
$args \\
--threads ${task.cpus} \\
--compressed 1

--threads ${task.cpus}

cat <<-END_VERSIONS > versions.yml
"${task.process}":
Expand Down
3 changes: 1 addition & 2 deletions modules/nf-core/mmseqs/taxonomy/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -38,8 +38,7 @@ process MMSEQS_TAXONOMY {
${prefix}_taxonomy/${prefix} \\
tmp1 \\
$args \\
--threads ${task.cpus} \\
--compressed 1
--threads ${task.cpus}

cat <<-END_VERSIONS > versions.yml
"${task.process}":
Expand Down
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