Fixed WorkflowMolkart.groovy

nf-core · Nov 14, 2023 · 0e5e4a2 · 0e5e4a2
1 parent 9f2e1ea
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -15,7 +15,7 @@ Added documentation - usage.md and output.md
 - updated nf-core module versions
 - CITATIONS.md updated
 - README.md updated
-- WorkflowMolkart.groovy updated to return citations if tools are used
+- WorkflowMolkart.groovy updated to return citations if tools are used (added commas)
 
 ## v1.0.1dev - [2023.25.10]
 

diff --git a/lib/WorkflowMolkart.groovy b/lib/WorkflowMolkart.groovy
@@ -59,10 +59,10 @@ class WorkflowMolkart {
         // Uncomment function in methodsDescriptionText to render in MultiQC report
         def citation_text = [
                 "Tools used in the workflow included:",
-                "Mindagap (Guerreiro et al. 2023)"
-                params.segmentation_method.split(',').contains('mesmer')   ? "Mesmer (Greenwald et al. 2021)" : "",
-                params.segmentation_method.split(',').contains('ilastik')  ? "ilastik (Berg et al. 2019)"     : "",
-                params.segmentation_method.split(',').contains('cellpose') ? "Cellpose (Stringer et al. 2021; Pachitariu et al 2022)" : "",
+                "Mindagap (Guerreiro et al. 2023),",
+                params.segmentation_method.split(',').contains('mesmer')   ? "Mesmer (Greenwald et al. 2021)," : "",
+                params.segmentation_method.split(',').contains('ilastik')  ? "ilastik (Berg et al. 2019),"     : "",
+                params.segmentation_method.split(',').contains('cellpose') ? "Cellpose (Stringer et al. 2021; Pachitariu et al 2022)," : "",
                 "MultiQC (Ewels et al. 2016)",
                 "."
             ].join(' ').trim()