From ae4c361cbafb5f2bde551cfe05b909453b2bfe7c Mon Sep 17 00:00:00 2001 From: Florian Wuennemann Date: Wed, 24 Jan 2024 09:14:49 +0100 Subject: [PATCH] Update test_full.config Changed mindagap params for full test to reduce runtime. --- conf/test_full.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/conf/test_full.config b/conf/test_full.config index 586de22..30c1090 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -17,7 +17,7 @@ params { input = 'https://raw.githubusercontent.com/nf-core/test-datasets/molkart/test_data/samplesheets/samplesheet_full_test.csv' segmentation_method = "mesmer,cellpose" - mindagap_boxsize = 7 - mindagap_loopnum = 100 + mindagap_boxsize = 3 + mindagap_loopnum = 40 cellpose_pretrained_model = "nuclei" }