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PR for first release #54

Merged
merged 183 commits into from
Feb 12, 2024
Merged

PR for first release #54

merged 183 commits into from
Feb 12, 2024

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kbestak
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@kbestak kbestak commented Jan 24, 2024

This is the first PR from dev to master for Molkart.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/molkart branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

nf-core-bot and others added 30 commits June 30, 2023 16:13
Important! Template update for nf-core/tools v2.9
First minimal working version of pipeline
Important! Template update for nf-core/tools v2.10
Create training subset functional
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github-actions bot commented Jan 24, 2024

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 14841ae

+| ✅ 161 tests passed       |+
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 1.0.0
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2024-01-24 15:37:23

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@apeltzer apeltzer left a comment

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Pretty cool, couldn't really find anything here but this went through reviews before ;-)

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@adamrtalbot adamrtalbot left a comment

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Looks good to me. Not certain about CHANGELOG format but if it works for you it's no big deal.

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The mixture of semantic versioning plus date is a bit confusing, I think you could use one or the other.

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Thanks for the tip! We were unsure how semantic versioning should change in the initial development phase which is why we added the dates to keep track.

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I quite like the dates. But I think having both in the title is confusing. How about:

v0.1.1
2024-01-30
- did a thing

2024-01-29
- did an earlier thing

but make it look nicer.

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I like it and will follow this for future updates :)

@FloWuenne
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Thanks for the reviews @apeltzer and @adamrtalbot ! 😄 🚀

@kbestak kbestak merged commit 7605a53 into master Feb 12, 2024
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5 participants